Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Ccdc28bQ8CEG5 Bahd1-201ENSMUST00000036578 4594 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Ccdc28bQ8CEG5 Slc25a25-203ENSMUST00000113307 2541 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Ccdc28bQ8CEG5 Limk1-201ENSMUST00000015137 3331 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Ccdc28bQ8CEG5 Cnst-201ENSMUST00000040706 4709 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Ccdc28bQ8CEG5 Cep85l-205ENSMUST00000220443 7425 ntAPPRIS P2 TSL 5 BASIC14.98□□□□□ -0.01
Ccdc28bQ8CEG5 Fam57b-202ENSMUST00000098032 1894 ntTSL 5 BASIC14.98□□□□□ -0.01
Ccdc28bQ8CEG5 Gng2-204ENSMUST00000160013 3826 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Ccdc28bQ8CEG5 Gm1818-201ENSMUST00000169406 1184 ntBASIC14.98□□□□□ -0.01
Ccdc28bQ8CEG5 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Ccdc28bQ8CEG5 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Ccdc28bQ8CEG5 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC14.98□□□□□ -0.01
Ccdc28bQ8CEG5 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Ccdc28bQ8CEG5 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Ccdc28bQ8CEG5 Sacm1l-201ENSMUST00000026270 3558 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Ccdc28bQ8CEG5 Cyp4x1os-201ENSMUST00000153951 2003 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Ccdc28bQ8CEG5 Rgs3-204ENSMUST00000107420 2752 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Ccdc28bQ8CEG5 Rcan1-201ENSMUST00000023672 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Ccdc28bQ8CEG5 Car10-203ENSMUST00000107858 2742 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Ccdc28bQ8CEG5 Sirpa-203ENSMUST00000103202 3982 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
Ccdc28bQ8CEG5 Slc2a6-201ENSMUST00000045702 2138 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Ccdc28bQ8CEG5 Igdcc4-202ENSMUST00000077696 6361 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
Ccdc28bQ8CEG5 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Ccdc28bQ8CEG5 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Ccdc28bQ8CEG5 Gm16796-201ENSMUST00000126086 3172 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Ccdc28bQ8CEG5 Arhgef5-201ENSMUST00000031750 5469 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
Ccdc28bQ8CEG5 Slc27a1-201ENSMUST00000034267 2795 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Ccdc28bQ8CEG5 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Ccdc28bQ8CEG5 Ss18l1-201ENSMUST00000041126 4343 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Ccdc28bQ8CEG5 2810474O19Rik-202ENSMUST00000100765 5356 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Ccdc28bQ8CEG5 Gtse1-201ENSMUST00000170629 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Ccdc28bQ8CEG5 AC166574.6-201ENSMUST00000227889 1806 ntBASIC14.97□□□□□ -0.01
Ccdc28bQ8CEG5 Ddx4-202ENSMUST00000099166 3012 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Ccdc28bQ8CEG5 Rgs16-201ENSMUST00000027748 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Ccdc28bQ8CEG5 Fbxl19-203ENSMUST00000186207 3178 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Ccdc28bQ8CEG5 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Ccdc28bQ8CEG5 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Ccdc28bQ8CEG5 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Ccdc28bQ8CEG5 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC14.97□□□□□ -0.01
Ccdc28bQ8CEG5 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC14.97□□□□□ -0.01
Ccdc28bQ8CEG5 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC14.97□□□□□ -0.01
Ccdc28bQ8CEG5 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC14.97□□□□□ -0.01
Ccdc28bQ8CEG5 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
Ccdc28bQ8CEG5 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Ccdc28bQ8CEG5 Trib1-201ENSMUST00000067543 4330 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Ccdc28bQ8CEG5 Mcc-202ENSMUST00000164666 3606 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Ccdc28bQ8CEG5 Ebag9-202ENSMUST00000226165 1931 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
Ccdc28bQ8CEG5 Kif7-203ENSMUST00000183846 4577 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
Ccdc28bQ8CEG5 Ptch1-201ENSMUST00000021921 7725 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Ccdc28bQ8CEG5 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC14.97□□□□□ -0.01
Ccdc28bQ8CEG5 Per3-201ENSMUST00000103204 5999 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Ccdc28bQ8CEG5 Itga3-201ENSMUST00000001548 4861 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
Ccdc28bQ8CEG5 Kcnj12-201ENSMUST00000041944 2459 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Ccdc28bQ8CEG5 Cpne1-202ENSMUST00000109607 3441 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Ccdc28bQ8CEG5 Zdhhc7-201ENSMUST00000034280 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Ccdc28bQ8CEG5 Kdm2b-201ENSMUST00000031435 3532 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Ccdc28bQ8CEG5 Mocs1-204ENSMUST00000173033 2588 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Ccdc28bQ8CEG5 Atg9a-208ENSMUST00000189702 4110 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
Ccdc28bQ8CEG5 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Ccdc28bQ8CEG5 Gins2-201ENSMUST00000034278 3900 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Ccdc28bQ8CEG5 Mpped1-201ENSMUST00000046168 3265 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Ccdc28bQ8CEG5 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC14.96□□□□□ -0.01
Ccdc28bQ8CEG5 Slc25a25-204ENSMUST00000113308 2643 ntTSL 5 BASIC14.96□□□□□ -0.01
Ccdc28bQ8CEG5 Zscan10-204ENSMUST00000118369 1006 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Ccdc28bQ8CEG5 Lmna-203ENSMUST00000120377 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
Ccdc28bQ8CEG5 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Ccdc28bQ8CEG5 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Ccdc28bQ8CEG5 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC14.96□□□□□ -0.01
Ccdc28bQ8CEG5 Gm8349-201ENSMUST00000182720 1003 ntBASIC14.96□□□□□ -0.01
Ccdc28bQ8CEG5 Krtap5-1-202ENSMUST00000188274 742 ntBASIC14.96□□□□□ -0.01
Ccdc28bQ8CEG5 Gm43799-201ENSMUST00000201845 579 ntBASIC14.96□□□□□ -0.01
Ccdc28bQ8CEG5 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Ccdc28bQ8CEG5 AC166491.1-201ENSMUST00000227053 2308 ntBASIC14.96□□□□□ -0.01
Ccdc28bQ8CEG5 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
Ccdc28bQ8CEG5 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Ccdc28bQ8CEG5 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
Ccdc28bQ8CEG5 Palm3-201ENSMUST00000055077 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Ccdc28bQ8CEG5 Hyou1-201ENSMUST00000066601 4432 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Ccdc28bQ8CEG5 Arid3a-203ENSMUST00000105377 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
Ccdc28bQ8CEG5 Mybl1-201ENSMUST00000088658 4980 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Ccdc28bQ8CEG5 Scap-201ENSMUST00000098350 4227 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Ccdc28bQ8CEG5 Nr2f1-205ENSMUST00000150498 2588 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Ccdc28bQ8CEG5 Armcx1-202ENSMUST00000051256 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Ccdc28bQ8CEG5 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
Ccdc28bQ8CEG5 Acin1-201ENSMUST00000022793 4735 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.02
Ccdc28bQ8CEG5 Syt1-201ENSMUST00000064054 4745 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
Ccdc28bQ8CEG5 Mpzl2-201ENSMUST00000034600 3107 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
Ccdc28bQ8CEG5 Rps6ka5-201ENSMUST00000043599 4406 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.02
Ccdc28bQ8CEG5 Ghr-201ENSMUST00000069451 4175 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ccdc28bQ8CEG5 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ccdc28bQ8CEG5 BC005537-201ENSMUST00000019276 5849 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ccdc28bQ8CEG5 Slc8b1-201ENSMUST00000068326 2898 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ccdc28bQ8CEG5 Gm43796-201ENSMUST00000202853 2012 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
Ccdc28bQ8CEG5 Ddi2-201ENSMUST00000102484 9553 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ccdc28bQ8CEG5 Ptprn2-201ENSMUST00000070733 3201 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ccdc28bQ8CEG5 Eif5a-207ENSMUST00000108610 1409 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ccdc28bQ8CEG5 Gm8668-201ENSMUST00000120559 1447 ntBASIC14.95□□□□□ -0.02
Ccdc28bQ8CEG5 Mtfp1-201ENSMUST00000004868 1411 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ccdc28bQ8CEG5 Gm15039-201ENSMUST00000118914 875 ntBASIC14.95□□□□□ -0.02
Ccdc28bQ8CEG5 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC14.95□□□□□ -0.02
Retrieved 100 of 76,532 protein–RNA pairs in 33.4 ms