Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Ttc16-202ENSMUST00000091059 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Usp47Q8BY87 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC21.29■■□□□ 1
Usp47Q8BY87 Zfp688-201ENSMUST00000106300 1015 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
Usp47Q8BY87 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC21.29■■□□□ 1
Usp47Q8BY87 Gm16163-201ENSMUST00000161868 1119 ntTSL 1 (best) BASIC21.29■■□□□ 1
Usp47Q8BY87 Nckipsd-206ENSMUST00000195323 467 ntTSL 3 BASIC21.29■■□□□ 1
Usp47Q8BY87 Treml1-204ENSMUST00000224001 1220 ntAPPRIS P2 BASIC21.29■■□□□ 1
Usp47Q8BY87 Erich4-201ENSMUST00000098663 911 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Usp47Q8BY87 Mtfp1-201ENSMUST00000004868 1411 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Usp47Q8BY87 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC21.29■■□□□ 1
Usp47Q8BY87 Actg1-204ENSMUST00000106215 1827 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Usp47Q8BY87 Siglece-201ENSMUST00000032667 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Usp47Q8BY87 Zmynd11-204ENSMUST00000110635 3881 ntTSL 5 BASIC21.29■■□□□ 1
Usp47Q8BY87 Cox16-201ENSMUST00000002757 2007 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Usp47Q8BY87 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC21.29■■□□□ 1
Usp47Q8BY87 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
Usp47Q8BY87 Gm2810-201ENSMUST00000118681 990 ntBASIC21.28■■□□□ 1
Usp47Q8BY87 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
Usp47Q8BY87 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC21.28■■□□□ 1
Usp47Q8BY87 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC21.28■■□□□ 1
Usp47Q8BY87 Tex30-213ENSMUST00000156392 1122 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
Usp47Q8BY87 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC21.28■■□□□ 1
Usp47Q8BY87 Gm17455-201ENSMUST00000164428 855 ntAPPRIS P1 TSL 3 BASIC21.28■■□□□ 1
Usp47Q8BY87 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
Usp47Q8BY87 Osr2-201ENSMUST00000022952 1724 ntTSL 1 (best) BASIC21.28■■□□□ 1
Usp47Q8BY87 Vps25-202ENSMUST00000042477 1106 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Usp47Q8BY87 Tmem183a-201ENSMUST00000049470 3149 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Usp47Q8BY87 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
Usp47Q8BY87 Dmrt1-202ENSMUST00000087525 1130 ntTSL 5 BASIC21.28■■□□□ 1
Usp47Q8BY87 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
Usp47Q8BY87 Cep63-201ENSMUST00000093791 2696 ntTSL 1 (best) BASIC21.28■■□□□ 1
Usp47Q8BY87 Gm14780-201ENSMUST00000118387 2737 ntBASIC21.28■■□□□ 1
Usp47Q8BY87 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC21.28■■□□□ 1
Usp47Q8BY87 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Usp47Q8BY87 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
Usp47Q8BY87 Sgpp1-202ENSMUST00000220285 3200 ntTSL 1 (best) BASIC21.27■■□□□ 1
Usp47Q8BY87 Upk1a-201ENSMUST00000006476 1421 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Usp47Q8BY87 Esrrb-206ENSMUST00000167891 1344 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Usp47Q8BY87 Synrg-207ENSMUST00000183456 3990 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
Usp47Q8BY87 Tmem37-201ENSMUST00000056089 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Usp47Q8BY87 Gm22065-201ENSMUST00000103753 110 ntBASIC21.27■■□□□ 1
Usp47Q8BY87 Gm22066-201ENSMUST00000103761 110 ntBASIC21.27■■□□□ 1
Usp47Q8BY87 Gm24932-201ENSMUST00000103763 110 ntBASIC21.27■■□□□ 1
Usp47Q8BY87 Gm24115-201ENSMUST00000103799 110 ntBASIC21.27■■□□□ 1
Usp47Q8BY87 Gm22190-201ENSMUST00000103827 110 ntBASIC21.27■■□□□ 1
Usp47Q8BY87 Gm22191-201ENSMUST00000103831 110 ntBASIC21.27■■□□□ 1
Usp47Q8BY87 Gm24721-201ENSMUST00000103849 110 ntBASIC21.27■■□□□ 1
Usp47Q8BY87 Gm28018-201ENSMUST00000103869 110 ntBASIC21.27■■□□□ 1
Usp47Q8BY87 Gm26399-201ENSMUST00000103937 110 ntBASIC21.27■■□□□ 1
Usp47Q8BY87 Gm25349-201ENSMUST00000177728 110 ntBASIC21.27■■□□□ 1
Usp47Q8BY87 Gm23616-201ENSMUST00000177797 110 ntBASIC21.27■■□□□ 1
Usp47Q8BY87 Gm25871-201ENSMUST00000177816 110 ntBASIC21.27■■□□□ 1
Usp47Q8BY87 Gm24752-201ENSMUST00000178240 110 ntBASIC21.27■■□□□ 1
Usp47Q8BY87 Gm24496-201ENSMUST00000178287 110 ntBASIC21.27■■□□□ 1
Usp47Q8BY87 Gm25649-201ENSMUST00000178476 110 ntBASIC21.27■■□□□ 1
Usp47Q8BY87 Gm25548-201ENSMUST00000178681 110 ntBASIC21.27■■□□□ 1
Usp47Q8BY87 Gm23147-201ENSMUST00000178841 110 ntBASIC21.27■■□□□ 1
Usp47Q8BY87 Gm26095-201ENSMUST00000179270 110 ntBASIC21.27■■□□□ 1
Usp47Q8BY87 Gm22171-201ENSMUST00000179283 110 ntBASIC21.27■■□□□ 1
Usp47Q8BY87 Gm23936-201ENSMUST00000179354 110 ntBASIC21.27■■□□□ 1
Usp47Q8BY87 Gm22619-201ENSMUST00000179516 110 ntBASIC21.27■■□□□ 1
Usp47Q8BY87 Gm25255-201ENSMUST00000179579 110 ntBASIC21.27■■□□□ 1
Usp47Q8BY87 Gm24755-201ENSMUST00000179691 110 ntBASIC21.27■■□□□ 1
Usp47Q8BY87 Gm26506-201ENSMUST00000179692 110 ntBASIC21.27■■□□□ 1
Usp47Q8BY87 Gm25086-201ENSMUST00000179931 110 ntBASIC21.27■■□□□ 1
Usp47Q8BY87 Gm23243-201ENSMUST00000180047 110 ntBASIC21.27■■□□□ 1
Usp47Q8BY87 Gm24659-201ENSMUST00000180212 110 ntBASIC21.27■■□□□ 1
Usp47Q8BY87 Gm24169-201ENSMUST00000180244 110 ntBASIC21.27■■□□□ 1
Usp47Q8BY87 Gm23689-201ENSMUST00000180354 110 ntBASIC21.27■■□□□ 1
Usp47Q8BY87 Gm27920-201ENSMUST00000183953 96 ntBASIC21.27■■□□□ 1
Usp47Q8BY87 Gm27359-201ENSMUST00000184153 110 ntBASIC21.27■■□□□ 1
Usp47Q8BY87 Gm27785-201ENSMUST00000184268 110 ntBASIC21.27■■□□□ 1
Usp47Q8BY87 Gm27466-201ENSMUST00000184396 110 ntBASIC21.27■■□□□ 1
Usp47Q8BY87 Gm27703-201ENSMUST00000184836 110 ntBASIC21.27■■□□□ 1
Usp47Q8BY87 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC21.27■■□□□ 1
Usp47Q8BY87 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC21.27■■□□□ 1
Usp47Q8BY87 Rgs10-201ENSMUST00000033133 880 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Usp47Q8BY87 Olfr324-201ENSMUST00000054683 1122 ntAPPRIS P2 BASIC21.27■■□□□ 1
Usp47Q8BY87 Dgkz-202ENSMUST00000099709 3512 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
Usp47Q8BY87 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC21.27■■□□□ 1
Usp47Q8BY87 P3h1-204ENSMUST00000121111 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
Usp47Q8BY87 Id2-202ENSMUST00000221761 1969 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
Usp47Q8BY87 Foxo3-201ENSMUST00000056974 2889 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Usp47Q8BY87 Zfp707-202ENSMUST00000109967 1703 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
Usp47Q8BY87 Cyp4f18-201ENSMUST00000003574 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Usp47Q8BY87 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC21.27■□□□□ 0.99
Usp47Q8BY87 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Usp47Q8BY87 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC21.27■□□□□ 0.99
Usp47Q8BY87 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
Usp47Q8BY87 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC21.26■□□□□ 0.99
Usp47Q8BY87 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Usp47Q8BY87 Hist1h3e-201ENSMUST00000105107 836 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
Usp47Q8BY87 Gm17613-201ENSMUST00000138893 669 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Usp47Q8BY87 Cd3g-201ENSMUST00000002101 1023 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Usp47Q8BY87 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Usp47Q8BY87 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
Usp47Q8BY87 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Usp47Q8BY87 Phospho2-201ENSMUST00000028494 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Usp47Q8BY87 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
Usp47Q8BY87 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 11.7 ms