Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Usp28Q5I043 Mcrs1-201ENSMUST00000041190 1915 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Usp28Q5I043 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Usp28Q5I043 Syt3-201ENSMUST00000118831 2627 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Usp28Q5I043 Pex5-201ENSMUST00000035861 3139 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
Usp28Q5I043 Cacna2d3-201ENSMUST00000022567 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Usp28Q5I043 Ccna2-201ENSMUST00000029270 2965 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Usp28Q5I043 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Usp28Q5I043 Lmf1-202ENSMUST00000116641 1858 ntAPPRIS P2 TSL 5 BASIC17.21■□□□□ 0.35
Usp28Q5I043 Adrb3-203ENSMUST00000121838 1864 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Usp28Q5I043 Lmf1-201ENSMUST00000063344 1861 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
Usp28Q5I043 Inha-201ENSMUST00000037330 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Usp28Q5I043 Tpm3-205ENSMUST00000121503 1139 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Usp28Q5I043 Gm14964-202ENSMUST00000149574 716 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Usp28Q5I043 Magohb-201ENSMUST00000032307 767 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Usp28Q5I043 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Usp28Q5I043 Wfdc6b-201ENSMUST00000094346 984 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Usp28Q5I043 Gm4793-201ENSMUST00000067468 2616 ntTSL 2 BASIC17.21■□□□□ 0.35
Usp28Q5I043 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Usp28Q5I043 P2rx3-201ENSMUST00000028465 1812 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Usp28Q5I043 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Usp28Q5I043 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.34
Usp28Q5I043 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.34
Usp28Q5I043 Cobl-203ENSMUST00000109651 5541 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Usp28Q5I043 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Usp28Q5I043 Qsox1-207ENSMUST00000194632 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Usp28Q5I043 Dusp15-203ENSMUST00000123121 2993 ntAPPRIS P1 TSL 3 BASIC17.2■□□□□ 0.34
Usp28Q5I043 Syt17-204ENSMUST00000203796 2957 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Usp28Q5I043 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Usp28Q5I043 Grk3-203ENSMUST00000197776 1570 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Usp28Q5I043 Rab23-201ENSMUST00000088287 4322 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Usp28Q5I043 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC17.2■□□□□ 0.34
Usp28Q5I043 Gm12134-201ENSMUST00000122109 520 ntBASIC17.2■□□□□ 0.34
Usp28Q5I043 Gm2308-201ENSMUST00000166539 1004 ntBASIC17.2■□□□□ 0.34
Usp28Q5I043 Gm28033-201ENSMUST00000184224 96 ntBASIC17.2■□□□□ 0.34
Usp28Q5I043 Arhgap33-206ENSMUST00000208522 781 ntTSL 3 BASIC17.2■□□□□ 0.34
Usp28Q5I043 Dcdc2c-201ENSMUST00000020963 1041 ntTSL 5 BASIC17.2■□□□□ 0.34
Usp28Q5I043 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Usp28Q5I043 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
Usp28Q5I043 Pccb-204ENSMUST00000149322 2188 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Usp28Q5I043 Prnp-201ENSMUST00000091288 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Usp28Q5I043 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Usp28Q5I043 Rbm15-201ENSMUST00000061772 4343 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Usp28Q5I043 Gm42632-201ENSMUST00000201707 2411 ntBASIC17.2■□□□□ 0.34
Usp28Q5I043 Zbtb14-201ENSMUST00000062369 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Usp28Q5I043 Slc30a10-201ENSMUST00000061093 5836 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Usp28Q5I043 Med22-202ENSMUST00000102899 3506 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Usp28Q5I043 Spns1-202ENSMUST00000119754 2001 ntTSL 5 BASIC17.2■□□□□ 0.34
Usp28Q5I043 Fnip2-201ENSMUST00000076136 3775 ntAPPRIS P2 TSL 5 BASIC17.19■□□□□ 0.34
Usp28Q5I043 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Usp28Q5I043 Rptor-201ENSMUST00000026671 6594 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Usp28Q5I043 Pld3-202ENSMUST00000117611 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Usp28Q5I043 Scube2-203ENSMUST00000106729 3563 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Usp28Q5I043 Ism2-202ENSMUST00000125733 2526 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
Usp28Q5I043 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC17.19■□□□□ 0.34
Usp28Q5I043 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Usp28Q5I043 Zfp410-201ENSMUST00000045931 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Usp28Q5I043 Csdc2-201ENSMUST00000038757 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Usp28Q5I043 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
Usp28Q5I043 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Usp28Q5I043 Nfs1-202ENSMUST00000109600 709 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Usp28Q5I043 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Usp28Q5I043 Slbp-205ENSMUST00000139518 1191 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
Usp28Q5I043 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC17.19■□□□□ 0.34
Usp28Q5I043 Nabp2-204ENSMUST00000166608 979 ntTSL 5 BASIC17.19■□□□□ 0.34
Usp28Q5I043 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
Usp28Q5I043 Chmp2a-201ENSMUST00000005711 949 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Usp28Q5I043 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Usp28Q5I043 Tbx3os1-206ENSMUST00000202307 1787 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Usp28Q5I043 Edn3-201ENSMUST00000029030 3117 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Usp28Q5I043 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
Usp28Q5I043 Klhl34-201ENSMUST00000087157 1935 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
Usp28Q5I043 Asb2-201ENSMUST00000021617 2690 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Usp28Q5I043 Gm16796-201ENSMUST00000126086 3172 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Usp28Q5I043 Ece2-201ENSMUST00000003898 3152 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
Usp28Q5I043 4930402H24Rik-202ENSMUST00000110243 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Usp28Q5I043 Gpsm1-203ENSMUST00000078616 3127 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Usp28Q5I043 Mcidas-201ENSMUST00000092089 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Usp28Q5I043 Cers5-202ENSMUST00000109035 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Usp28Q5I043 Atp6v0d1-201ENSMUST00000013304 1629 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Usp28Q5I043 Gm14026-201ENSMUST00000120625 1789 ntBASIC17.18■□□□□ 0.34
Usp28Q5I043 Daxx-201ENSMUST00000079421 2580 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Usp28Q5I043 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Usp28Q5I043 Bst1-201ENSMUST00000101237 2856 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Usp28Q5I043 Gm37812-201ENSMUST00000195216 2475 ntBASIC17.18■□□□□ 0.34
Usp28Q5I043 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
Usp28Q5I043 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Usp28Q5I043 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC17.18■□□□□ 0.34
Usp28Q5I043 Gm11453-201ENSMUST00000117318 1007 ntBASIC17.18■□□□□ 0.34
Usp28Q5I043 Gm11185-201ENSMUST00000117732 1007 ntBASIC17.18■□□□□ 0.34
Usp28Q5I043 Gm5682-201ENSMUST00000173402 505 ntBASIC17.18■□□□□ 0.34
Usp28Q5I043 Tbx15-201ENSMUST00000029462 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Usp28Q5I043 Mtfp1-201ENSMUST00000004868 1411 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Usp28Q5I043 Ipo8-201ENSMUST00000048418 5360 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Usp28Q5I043 Gm12620-201ENSMUST00000119791 1986 ntBASIC17.18■□□□□ 0.34
Usp28Q5I043 Gm12612-201ENSMUST00000140182 1986 ntBASIC17.18■□□□□ 0.34
Usp28Q5I043 Vrk3-201ENSMUST00000002275 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Usp28Q5I043 Pex1-202ENSMUST00000121291 4555 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
Usp28Q5I043 Ttc24-201ENSMUST00000050258 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Usp28Q5I043 Gm5184-201ENSMUST00000220417 1702 ntBASIC17.18■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 23.9 ms