Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Sfxn5-203ENSMUST00000113787 638 ntTSL 2 BASIC16.53■□□□□ 0.24
Lig3P97386 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC16.53■□□□□ 0.24
Lig3P97386 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC16.53■□□□□ 0.24
Lig3P97386 Gm20680-201ENSMUST00000176881 789 ntTSL 5 BASIC16.53■□□□□ 0.24
Lig3P97386 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Lig3P97386 Gm38708-201ENSMUST00000203855 677 ntTSL 5 BASIC16.53■□□□□ 0.24
Lig3P97386 Lce1b-201ENSMUST00000029531 647 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Lig3P97386 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Lig3P97386 Dlg4-201ENSMUST00000018700 3204 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Lig3P97386 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC16.53■□□□□ 0.24
Lig3P97386 Pnma1-201ENSMUST00000061425 2359 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
Lig3P97386 Hacd4-201ENSMUST00000030221 2089 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Lig3P97386 Dcdc2a-201ENSMUST00000036932 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Lig3P97386 Kmt5b-206ENSMUST00000113973 6130 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
Lig3P97386 Ubc-203ENSMUST00000156249 2581 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
Lig3P97386 Tbc1d20-201ENSMUST00000028963 3386 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Lig3P97386 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Lig3P97386 Prickle1-201ENSMUST00000048982 4085 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Lig3P97386 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Lig3P97386 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Lig3P97386 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Lig3P97386 Unc5d-203ENSMUST00000210298 3060 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Lig3P97386 Unc5d-205ENSMUST00000211448 3087 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Lig3P97386 Ror1-201ENSMUST00000039630 5762 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Lig3P97386 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC16.52■□□□□ 0.24
Lig3P97386 Sptlc2-201ENSMUST00000021424 6710 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Lig3P97386 Csnk1g1-212ENSMUST00000206048 2073 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
Lig3P97386 Hebp2-203ENSMUST00000214548 2083 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Lig3P97386 Pcdha5-201ENSMUST00000192168 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Lig3P97386 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
Lig3P97386 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Lig3P97386 Pdk1-201ENSMUST00000006669 5185 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Lig3P97386 Stat3-207ENSMUST00000138438 2506 ntTSL 5 BASIC16.52■□□□□ 0.24
Lig3P97386 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Lig3P97386 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC16.52■□□□□ 0.24
Lig3P97386 Ltc4s-202ENSMUST00000102772 649 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Lig3P97386 Ern1-202ENSMUST00000106799 660 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Lig3P97386 Gm15862-201ENSMUST00000146349 361 ntTSL 2 BASIC16.52■□□□□ 0.24
Lig3P97386 Gng2-204ENSMUST00000160013 3826 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Lig3P97386 AC124549.3-201ENSMUST00000225541 367 ntBASIC16.52■□□□□ 0.24
Lig3P97386 Meaf6-201ENSMUST00000055213 872 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Lig3P97386 Olfr1410-201ENSMUST00000079790 969 ntTSL 5 BASIC16.52■□□□□ 0.24
Lig3P97386 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Lig3P97386 Mapk8ip3-203ENSMUST00000115229 5603 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
Lig3P97386 Samd14-201ENSMUST00000055947 3318 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Lig3P97386 Epha2-201ENSMUST00000006614 3913 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Lig3P97386 Ccdc166-201ENSMUST00000182172 2584 ntBASIC16.52■□□□□ 0.23
Lig3P97386 Camta1-203ENSMUST00000105668 4962 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
Lig3P97386 Zfp184-202ENSMUST00000102978 3198 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
Lig3P97386 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Lig3P97386 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Lig3P97386 Sf1-204ENSMUST00000113489 2863 ntTSL 5 BASIC16.52■□□□□ 0.23
Lig3P97386 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Lig3P97386 Dand5-201ENSMUST00000065539 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Lig3P97386 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Lig3P97386 Brd7-201ENSMUST00000034085 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Lig3P97386 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Lig3P97386 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC16.51■□□□□ 0.23
Lig3P97386 Pbk-201ENSMUST00000022612 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Lig3P97386 Fam151a-201ENSMUST00000047620 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Lig3P97386 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
Lig3P97386 A330035P11Rik-202ENSMUST00000144926 3074 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Lig3P97386 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC16.51■□□□□ 0.23
Lig3P97386 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC16.51■□□□□ 0.23
Lig3P97386 AC157650.3-201ENSMUST00000225058 1476 ntBASIC16.51■□□□□ 0.23
Lig3P97386 Tmem253-201ENSMUST00000100638 1234 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Lig3P97386 Cyb5rl-204ENSMUST00000106760 840 ntTSL 3 BASIC16.51■□□□□ 0.23
Lig3P97386 Gm13616-201ENSMUST00000120600 222 ntBASIC16.51■□□□□ 0.23
Lig3P97386 AA543401-201ENSMUST00000164248 1269 ntBASIC16.51■□□□□ 0.23
Lig3P97386 Dhrs7c-205ENSMUST00000168612 1108 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Lig3P97386 Thap4-205ENSMUST00000189728 713 ntTSL 2 BASIC16.51■□□□□ 0.23
Lig3P97386 Mt3-201ENSMUST00000034211 536 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Lig3P97386 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC16.51■□□□□ 0.23
Lig3P97386 Sumo1-201ENSMUST00000091374 1215 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Lig3P97386 Pex5l-206ENSMUST00000108226 2632 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Lig3P97386 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Lig3P97386 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC16.51■□□□□ 0.23
Lig3P97386 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Lig3P97386 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Lig3P97386 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Lig3P97386 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC16.51■□□□□ 0.23
Lig3P97386 Adam15-204ENSMUST00000107448 2893 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
Lig3P97386 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Lig3P97386 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC16.5■□□□□ 0.23
Lig3P97386 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC16.5■□□□□ 0.23
Lig3P97386 Gm14634-201ENSMUST00000139163 1662 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Lig3P97386 Lurap1-201ENSMUST00000030469 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Lig3P97386 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Lig3P97386 Rprd1a-201ENSMUST00000046206 4297 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Lig3P97386 Fgfr3-201ENSMUST00000067150 4218 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
Lig3P97386 Gm17455-201ENSMUST00000164428 855 ntAPPRIS P1 TSL 3 BASIC16.5■□□□□ 0.23
Lig3P97386 Psmg3-202ENSMUST00000182602 733 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Lig3P97386 Gm30684-201ENSMUST00000205632 600 ntTSL 3 BASIC16.5■□□□□ 0.23
Lig3P97386 AC159106.1-201ENSMUST00000224421 690 ntBASIC16.5■□□□□ 0.23
Lig3P97386 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
Lig3P97386 Slc35b2-202ENSMUST00000223987 1766 ntBASIC16.5■□□□□ 0.23
Lig3P97386 Hpse-201ENSMUST00000045617 3117 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Lig3P97386 Gpt2-201ENSMUST00000034136 3639 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Lig3P97386 Tle1-202ENSMUST00000072695 3644 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Lig3P97386 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 29.1 ms