Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Lmcd1-201ENSMUST00000032376 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Hmgb1P63158 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Hmgb1P63158 Btaf1-201ENSMUST00000099494 7204 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Hmgb1P63158 Armc9-205ENSMUST00000131412 2160 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Hmgb1P63158 Aldh1a3-203ENSMUST00000174209 1496 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Hmgb1P63158 Hnrnpul1-205ENSMUST00000206832 3784 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Hmgb1P63158 Tbc1d20-201ENSMUST00000028963 3386 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Hmgb1P63158 Six4-201ENSMUST00000043208 6402 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Hmgb1P63158 Gm34419-201ENSMUST00000211383 1387 ntTSL 5 BASIC16.66■□□□□ 0.26
Hmgb1P63158 Gstt2-201ENSMUST00000038257 1370 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Hmgb1P63158 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
Hmgb1P63158 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Hmgb1P63158 Slc44a5-201ENSMUST00000089948 4098 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Hmgb1P63158 Adgrl1-210ENSMUST00000152978 5734 ntTSL 5 BASIC16.66■□□□□ 0.26
Hmgb1P63158 Itgav-202ENSMUST00000111740 6788 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Hmgb1P63158 Hsd3b7-202ENSMUST00000106271 1713 ntTSL 5 BASIC16.66■□□□□ 0.26
Hmgb1P63158 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC16.66■□□□□ 0.26
Hmgb1P63158 Tmem40-202ENSMUST00000112946 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Hmgb1P63158 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
Hmgb1P63158 Gm13403-202ENSMUST00000134271 674 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Hmgb1P63158 Mast3-201ENSMUST00000166004 5305 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Hmgb1P63158 Ddc-210ENSMUST00000178704 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Hmgb1P63158 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC16.66■□□□□ 0.26
Hmgb1P63158 Bin2-207ENSMUST00000183211 2036 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Hmgb1P63158 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Hmgb1P63158 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Hmgb1P63158 Spata33-204ENSMUST00000212346 715 ntTSL 2 BASIC16.66■□□□□ 0.26
Hmgb1P63158 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Hmgb1P63158 Runx2-202ENSMUST00000113571 5898 ntAPPRIS P3 TSL 5 BASIC16.66■□□□□ 0.26
Hmgb1P63158 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Hmgb1P63158 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC16.66■□□□□ 0.26
Hmgb1P63158 Hsph1-209ENSMUST00000202089 3054 ntTSL 5 BASIC16.66■□□□□ 0.26
Hmgb1P63158 Bmp8b-201ENSMUST00000002457 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Hmgb1P63158 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Hmgb1P63158 Cacnb4-201ENSMUST00000078324 8225 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Hmgb1P63158 Aptx-202ENSMUST00000068125 5383 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
Hmgb1P63158 P3h1-203ENSMUST00000102662 2977 ntAPPRIS P3 TSL 5 BASIC16.65■□□□□ 0.26
Hmgb1P63158 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Hmgb1P63158 Ddi2-201ENSMUST00000102484 9553 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Hmgb1P63158 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Hmgb1P63158 Arhgef40-220ENSMUST00000182909 5108 ntAPPRIS P4 TSL 5 BASIC16.65■□□□□ 0.26
Hmgb1P63158 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Hmgb1P63158 Ttyh1-203ENSMUST00000119661 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Hmgb1P63158 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Hmgb1P63158 Celf4-206ENSMUST00000224553 1729 ntBASIC16.65■□□□□ 0.26
Hmgb1P63158 Kcnh1-201ENSMUST00000078470 7242 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Hmgb1P63158 Edem3-201ENSMUST00000059498 6327 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Hmgb1P63158 D030068K23Rik-201ENSMUST00000180382 2617 ntTSL 2 BASIC16.65■□□□□ 0.26
Hmgb1P63158 Dnmt3b-210ENSMUST00000109774 4320 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
Hmgb1P63158 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC16.65■□□□□ 0.26
Hmgb1P63158 Gm11780-201ENSMUST00000136880 516 ntBASIC16.65■□□□□ 0.26
Hmgb1P63158 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Hmgb1P63158 0610025J13Rik-203ENSMUST00000180374 713 ntTSL 5 BASIC16.65■□□□□ 0.26
Hmgb1P63158 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Hmgb1P63158 Gm4535-201ENSMUST00000182274 558 ntBASIC16.65■□□□□ 0.26
Hmgb1P63158 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Hmgb1P63158 2210406O10Rik-201ENSMUST00000044964 937 ntTSL 5 BASIC16.65■□□□□ 0.26
Hmgb1P63158 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
Hmgb1P63158 Gm10355-201ENSMUST00000097146 517 ntBASIC16.65■□□□□ 0.26
Hmgb1P63158 Dsel-201ENSMUST00000035462 5759 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Hmgb1P63158 Rad54l2-201ENSMUST00000046502 9305 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Hmgb1P63158 2810474O19Rik-202ENSMUST00000100765 5356 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Hmgb1P63158 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Hmgb1P63158 Tmem116-204ENSMUST00000111795 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Hmgb1P63158 Cul3-201ENSMUST00000163119 4709 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Hmgb1P63158 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Hmgb1P63158 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC16.65■□□□□ 0.26
Hmgb1P63158 Usp33-202ENSMUST00000117492 3886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Hmgb1P63158 Gm37728-201ENSMUST00000195025 2292 ntBASIC16.65■□□□□ 0.26
Hmgb1P63158 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
Hmgb1P63158 Iqcd-201ENSMUST00000069259 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Hmgb1P63158 Bcl7b-203ENSMUST00000111188 1434 ntAPPRIS ALT1 TSL 5 BASIC16.64■□□□□ 0.25
Hmgb1P63158 Sacm1l-201ENSMUST00000026270 3558 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Hmgb1P63158 Zfp90-201ENSMUST00000034382 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Hmgb1P63158 Fam219b-201ENSMUST00000093833 3001 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Hmgb1P63158 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Hmgb1P63158 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC16.64■□□□□ 0.25
Hmgb1P63158 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Hmgb1P63158 Nabp2-204ENSMUST00000166608 979 ntTSL 5 BASIC16.64■□□□□ 0.25
Hmgb1P63158 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Hmgb1P63158 Tm4sf4-201ENSMUST00000029377 1496 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Hmgb1P63158 A830012C17Rik-201ENSMUST00000131498 1665 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Hmgb1P63158 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
Hmgb1P63158 Mdm1-202ENSMUST00000163238 2461 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Hmgb1P63158 Alpl-201ENSMUST00000030551 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Hmgb1P63158 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Hmgb1P63158 Cab39-202ENSMUST00000113360 3805 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Hmgb1P63158 Golt1b-201ENSMUST00000032372 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Hmgb1P63158 Ric8b-201ENSMUST00000038523 3069 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Hmgb1P63158 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Hmgb1P63158 Sec24a-204ENSMUST00000109097 6581 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Hmgb1P63158 Crb2-201ENSMUST00000050372 6372 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Hmgb1P63158 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Hmgb1P63158 Efs-202ENSMUST00000227037 2540 ntBASIC16.63■□□□□ 0.25
Hmgb1P63158 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Hmgb1P63158 Chdh-201ENSMUST00000067620 5690 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Hmgb1P63158 Sec24a-202ENSMUST00000064297 2104 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Hmgb1P63158 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Hmgb1P63158 Gm32369-201ENSMUST00000222630 1467 ntTSL 5 BASIC16.63■□□□□ 0.25
Hmgb1P63158 Plk1-201ENSMUST00000033154 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 34 ms