Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Arpp19-201ENSMUST00000007800 4046 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Lire1P11260 Arvcf-205ENSMUST00000115614 4698 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Lire1P11260 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC14.36□□□□□ -0.11
Lire1P11260 Pcdhga8-201ENSMUST00000066149 4730 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Lire1P11260 Sox11-201ENSMUST00000079063 8311 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Lire1P11260 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Lire1P11260 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Lire1P11260 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Lire1P11260 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC14.36□□□□□ -0.11
Lire1P11260 Zmym4-201ENSMUST00000106108 7102 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Lire1P11260 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Lire1P11260 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Lire1P11260 Unc5d-203ENSMUST00000210298 3060 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Lire1P11260 Unc5d-205ENSMUST00000211448 3087 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Lire1P11260 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lire1P11260 Ntrk2-209ENSMUST00000225950 2640 ntBASIC14.35□□□□□ -0.11
Lire1P11260 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lire1P11260 Gnl3-201ENSMUST00000037739 1947 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lire1P11260 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Lire1P11260 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lire1P11260 Fars2-201ENSMUST00000021857 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lire1P11260 Bend6-204ENSMUST00000129464 1750 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Lire1P11260 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Lire1P11260 Slc35b2-202ENSMUST00000223987 1766 ntBASIC14.35□□□□□ -0.11
Lire1P11260 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lire1P11260 Map6-203ENSMUST00000122101 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lire1P11260 BC006965-201ENSMUST00000124028 1952 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Lire1P11260 I730028E13Rik-201ENSMUST00000216012 1959 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Lire1P11260 Stat3-207ENSMUST00000138438 2506 ntTSL 5 BASIC14.35□□□□□ -0.11
Lire1P11260 Nacad-201ENSMUST00000045713 4892 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lire1P11260 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lire1P11260 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lire1P11260 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
Lire1P11260 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC14.35□□□□□ -0.11
Lire1P11260 Tma7-201ENSMUST00000167504 944 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lire1P11260 4930477E14Rik-201ENSMUST00000181412 621 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Lire1P11260 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC14.35□□□□□ -0.11
Lire1P11260 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC14.35□□□□□ -0.11
Lire1P11260 Vti1a-206ENSMUST00000225529 1244 ntBASIC14.35□□□□□ -0.11
Lire1P11260 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Lire1P11260 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lire1P11260 Edem3-202ENSMUST00000187951 3115 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Lire1P11260 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lire1P11260 Cers5-202ENSMUST00000109035 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lire1P11260 Nav1-207ENSMUST00000190298 8557 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lire1P11260 Nop53-201ENSMUST00000044158 3176 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lire1P11260 Tnn-201ENSMUST00000039178 5817 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lire1P11260 Wnk1-203ENSMUST00000088644 11330 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Lire1P11260 Mfsd1-201ENSMUST00000029344 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lire1P11260 Klhl12-202ENSMUST00000112232 3220 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Lire1P11260 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Lire1P11260 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Lire1P11260 Cttn-202ENSMUST00000103079 3286 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lire1P11260 Bcl11b-201ENSMUST00000066060 8111 ntAPPRIS P4 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lire1P11260 Cobl-201ENSMUST00000046755 5615 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lire1P11260 Kpnb1-201ENSMUST00000001479 5894 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lire1P11260 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lire1P11260 Iqcj-201ENSMUST00000063263 1579 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lire1P11260 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Lire1P11260 Bag6-202ENSMUST00000166426 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lire1P11260 Poc1b-204ENSMUST00000159990 3449 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Lire1P11260 Spon2-201ENSMUST00000046186 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lire1P11260 Fkbp14-202ENSMUST00000117375 1830 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Lire1P11260 Sema3b-202ENSMUST00000102529 2875 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lire1P11260 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lire1P11260 Lmntd2-202ENSMUST00000170841 2077 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lire1P11260 Grin3a-202ENSMUST00000093859 7491 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Lire1P11260 Fbxo34-203ENSMUST00000163324 3132 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
Lire1P11260 Hpse-201ENSMUST00000045617 3117 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lire1P11260 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
Lire1P11260 Gm27525-201ENSMUST00000184465 107 ntBASIC14.34□□□□□ -0.11
Lire1P11260 Gm20324-201ENSMUST00000186291 1118 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Lire1P11260 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC14.34□□□□□ -0.11
Lire1P11260 2810030D12Rik-203ENSMUST00000190461 1039 ntBASIC14.34□□□□□ -0.11
Lire1P11260 AC138767.1-201ENSMUST00000222661 415 ntBASIC14.34□□□□□ -0.11
Lire1P11260 Dido1-202ENSMUST00000087517 8723 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lire1P11260 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lire1P11260 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lire1P11260 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Lire1P11260 Tmem9b-202ENSMUST00000118571 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lire1P11260 Nkain2-203ENSMUST00000191234 3760 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lire1P11260 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Lire1P11260 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lire1P11260 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Lire1P11260 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
Lire1P11260 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Lire1P11260 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Lire1P11260 Dse-201ENSMUST00000048010 4389 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Lire1P11260 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Lire1P11260 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Lire1P11260 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Lire1P11260 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Lire1P11260 Tmpo-201ENSMUST00000020123 3772 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Lire1P11260 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Lire1P11260 Hspa8-202ENSMUST00000117557 2019 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Lire1P11260 Gm45740-201ENSMUST00000212103 2003 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Lire1P11260 Tmem254c-202ENSMUST00000100819 1211 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Lire1P11260 Mras-202ENSMUST00000119472 1190 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Lire1P11260 Uba52-203ENSMUST00000125184 711 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Lire1P11260 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC14.33□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 43.5 ms