Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 4932443L11Rik-201ENSMUST00000148353 414 ntTSL 5 BASIC17.79■□□□□ 0.44
Scn11aQ9R053 Nfya-203ENSMUST00000159063 1255 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Scn11aQ9R053 Gm43703-201ENSMUST00000200523 763 ntBASIC17.79■□□□□ 0.44
Scn11aQ9R053 Slc10a7-204ENSMUST00000209992 939 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Scn11aQ9R053 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Scn11aQ9R053 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Scn11aQ9R053 Skida1-201ENSMUST00000066885 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Scn11aQ9R053 Plk1-201ENSMUST00000033154 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Scn11aQ9R053 Pcdhgc4-203ENSMUST00000195239 2272 ntTSL 3 BASIC17.79■□□□□ 0.44
Scn11aQ9R053 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Scn11aQ9R053 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Scn11aQ9R053 Dnajc22-201ENSMUST00000061295 1564 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Scn11aQ9R053 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Scn11aQ9R053 Krt9-201ENSMUST00000059707 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Scn11aQ9R053 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Scn11aQ9R053 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
Scn11aQ9R053 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Scn11aQ9R053 Gm6912-201ENSMUST00000117218 544 ntBASIC17.79■□□□□ 0.44
Scn11aQ9R053 Gm13453-201ENSMUST00000118708 357 ntBASIC17.79■□□□□ 0.44
Scn11aQ9R053 Igfbp4-204ENSMUST00000140772 742 ntTSL 2 BASIC17.79■□□□□ 0.44
Scn11aQ9R053 1700055C04Rik-201ENSMUST00000176450 355 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Scn11aQ9R053 Ffar3-202ENSMUST00000185748 1234 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
Scn11aQ9R053 Gm32351-201ENSMUST00000220503 438 ntTSL 5 BASIC17.79■□□□□ 0.44
Scn11aQ9R053 Vkorc1-201ENSMUST00000033074 748 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Scn11aQ9R053 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Scn11aQ9R053 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Scn11aQ9R053 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Scn11aQ9R053 Ptpa-203ENSMUST00000113603 2169 ntTSL 5 BASIC17.78■□□□□ 0.44
Scn11aQ9R053 Cyp2t4-201ENSMUST00000108385 1599 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Scn11aQ9R053 Dyx1c1-202ENSMUST00000098567 1612 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Scn11aQ9R053 Grb7-201ENSMUST00000019456 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Scn11aQ9R053 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC17.78■□□□□ 0.44
Scn11aQ9R053 Apoa4-201ENSMUST00000034585 1815 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Scn11aQ9R053 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Scn11aQ9R053 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Scn11aQ9R053 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Scn11aQ9R053 Gm15701-201ENSMUST00000129559 573 ntTSL 3 BASIC17.78■□□□□ 0.44
Scn11aQ9R053 Gm15494-202ENSMUST00000171665 451 ntTSL 2 BASIC17.78■□□□□ 0.44
Scn11aQ9R053 Erdr1-204ENSMUST00000179483 688 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Scn11aQ9R053 Gm6473-201ENSMUST00000188572 1210 ntBASIC17.78■□□□□ 0.44
Scn11aQ9R053 Armc12-201ENSMUST00000025060 1083 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Scn11aQ9R053 Zswim7-201ENSMUST00000072916 732 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Scn11aQ9R053 Cenpm-201ENSMUST00000089155 1109 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Scn11aQ9R053 Vdac3-201ENSMUST00000009036 1354 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Scn11aQ9R053 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Scn11aQ9R053 Mief2-201ENSMUST00000018743 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Scn11aQ9R053 Gm26755-201ENSMUST00000180703 2657 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Scn11aQ9R053 Ptcd2-201ENSMUST00000022153 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Scn11aQ9R053 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Scn11aQ9R053 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Scn11aQ9R053 Dpm1-209ENSMUST00000154111 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Scn11aQ9R053 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Scn11aQ9R053 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Scn11aQ9R053 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
Scn11aQ9R053 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
Scn11aQ9R053 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Scn11aQ9R053 Tpt1-ps6-201ENSMUST00000121768 523 ntBASIC17.77■□□□□ 0.44
Scn11aQ9R053 Tmem109-207ENSMUST00000147699 1096 ntTSL 2 BASIC17.77■□□□□ 0.44
Scn11aQ9R053 Wfdc2-201ENSMUST00000017867 849 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Scn11aQ9R053 Mir7085-201ENSMUST00000184353 66 ntBASIC17.77■□□□□ 0.44
Scn11aQ9R053 Mir6420-201ENSMUST00000185032 102 ntBASIC17.77■□□□□ 0.44
Scn11aQ9R053 Gm37596-201ENSMUST00000193565 1021 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
Scn11aQ9R053 9230114J08Rik-201ENSMUST00000200375 350 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Scn11aQ9R053 Mfng-201ENSMUST00000018313 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Scn11aQ9R053 Rhbg-201ENSMUST00000171887 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Scn11aQ9R053 Tubgcp4-202ENSMUST00000110657 1992 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Scn11aQ9R053 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Scn11aQ9R053 Mbp-204ENSMUST00000080658 2063 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Scn11aQ9R053 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Scn11aQ9R053 Slc43a3-201ENSMUST00000090726 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Scn11aQ9R053 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Scn11aQ9R053 Ttc14-202ENSMUST00000108210 2684 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
Scn11aQ9R053 Tatdn2-205ENSMUST00000204753 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Scn11aQ9R053 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Scn11aQ9R053 Gm26774-201ENSMUST00000181534 2401 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
Scn11aQ9R053 Gnat1-201ENSMUST00000010205 2328 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Scn11aQ9R053 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC17.76■□□□□ 0.43
Scn11aQ9R053 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
Scn11aQ9R053 Gm14767-201ENSMUST00000121559 586 ntBASIC17.76■□□□□ 0.43
Scn11aQ9R053 Gm38182-203ENSMUST00000192984 993 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Scn11aQ9R053 Pcdhgc5-204ENSMUST00000193941 593 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Scn11aQ9R053 Gm38319-201ENSMUST00000194537 1266 ntBASIC17.76■□□□□ 0.43
Scn11aQ9R053 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Scn11aQ9R053 Hs3st5-203ENSMUST00000168572 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Scn11aQ9R053 H2afy2-201ENSMUST00000020283 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Scn11aQ9R053 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Scn11aQ9R053 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
Scn11aQ9R053 Tle2-205ENSMUST00000135211 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Scn11aQ9R053 Gm17315-201ENSMUST00000181408 2504 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Scn11aQ9R053 Csnk1e-202ENSMUST00000120859 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Scn11aQ9R053 Rgs6-203ENSMUST00000185665 2201 ntAPPRIS P4 TSL 5 BASIC17.76■□□□□ 0.43
Scn11aQ9R053 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Scn11aQ9R053 Myl4-203ENSMUST00000106957 943 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
Scn11aQ9R053 Gm14719-201ENSMUST00000121891 340 ntBASIC17.76■□□□□ 0.43
Scn11aQ9R053 1700121C08Rik-201ENSMUST00000137546 677 ntTSL 3 BASIC17.76■□□□□ 0.43
Scn11aQ9R053 Pttg1ip-205ENSMUST00000162429 652 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
Scn11aQ9R053 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Scn11aQ9R053 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Scn11aQ9R053 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Scn11aQ9R053 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 44.3 ms