Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Rnf113a1-201ENSMUST00000046433 1223 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
Scn4aQ9ER60 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Scn4aQ9ER60 Yif1a-201ENSMUST00000025811 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Scn4aQ9ER60 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Scn4aQ9ER60 Phospho2-201ENSMUST00000028494 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Scn4aQ9ER60 6330418K02Rik-201ENSMUST00000124298 743 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Scn4aQ9ER60 St6galnac6-209ENSMUST00000131229 1013 ntTSL 2 BASIC20.41■□□□□ 0.86
Scn4aQ9ER60 4933427I22Rik-201ENSMUST00000138672 393 ntTSL 3 BASIC20.41■□□□□ 0.86
Scn4aQ9ER60 Hoxb5os-202ENSMUST00000150698 596 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Scn4aQ9ER60 Gm15411-202ENSMUST00000201913 668 ntTSL 3 BASIC20.41■□□□□ 0.86
Scn4aQ9ER60 Gm17795-201ENSMUST00000214505 757 ntBASIC20.41■□□□□ 0.86
Scn4aQ9ER60 Hoxc10-201ENSMUST00000001699 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Scn4aQ9ER60 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Scn4aQ9ER60 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Scn4aQ9ER60 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Scn4aQ9ER60 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Scn4aQ9ER60 Asb2-204ENSMUST00000149431 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Scn4aQ9ER60 Folr1-205ENSMUST00000106986 1286 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Scn4aQ9ER60 Dlk1-202ENSMUST00000109841 879 ntTSL 5 BASIC20.41■□□□□ 0.86
Scn4aQ9ER60 Nudt1-203ENSMUST00000110825 599 ntTSL 2 BASIC20.41■□□□□ 0.86
Scn4aQ9ER60 Wdr45-225ENSMUST00000208443 1172 ntTSL 5 BASIC20.41■□□□□ 0.86
Scn4aQ9ER60 1700007G11Rik-201ENSMUST00000080333 861 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Scn4aQ9ER60 Gm15816-201ENSMUST00000141930 1688 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Scn4aQ9ER60 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Scn4aQ9ER60 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Scn4aQ9ER60 Fam118b-203ENSMUST00000121564 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Scn4aQ9ER60 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
Scn4aQ9ER60 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Scn4aQ9ER60 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC20.4■□□□□ 0.86
Scn4aQ9ER60 Gm42690-201ENSMUST00000197921 1836 ntBASIC20.4■□□□□ 0.86
Scn4aQ9ER60 Cpz-201ENSMUST00000038676 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Scn4aQ9ER60 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Scn4aQ9ER60 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Scn4aQ9ER60 Gm37047-201ENSMUST00000191992 533 ntTSL 5 BASIC20.4■□□□□ 0.86
Scn4aQ9ER60 Spc24-204ENSMUST00000216057 627 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Scn4aQ9ER60 AC155258.1-201ENSMUST00000219303 253 ntBASIC20.4■□□□□ 0.86
Scn4aQ9ER60 Coro6-203ENSMUST00000079770 1298 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Scn4aQ9ER60 Hmgb1-202ENSMUST00000093196 1092 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Scn4aQ9ER60 E230016M11Rik-201ENSMUST00000130657 1764 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Scn4aQ9ER60 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Scn4aQ9ER60 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Scn4aQ9ER60 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Scn4aQ9ER60 AC153938.1-201ENSMUST00000220354 1425 ntTSL 5 BASIC20.4■□□□□ 0.86
Scn4aQ9ER60 Fpr1-201ENSMUST00000061516 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Scn4aQ9ER60 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Scn4aQ9ER60 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
Scn4aQ9ER60 Amdhd2-201ENSMUST00000040735 1496 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Scn4aQ9ER60 Cdkn1a-202ENSMUST00000119901 748 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
Scn4aQ9ER60 Gm45880-201ENSMUST00000213041 853 ntBASIC20.39■□□□□ 0.86
Scn4aQ9ER60 Rpl10a-201ENSMUST00000042334 829 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Scn4aQ9ER60 Alox8-202ENSMUST00000094078 1947 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.86
Scn4aQ9ER60 Uros-203ENSMUST00000106145 1644 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Scn4aQ9ER60 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Scn4aQ9ER60 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Scn4aQ9ER60 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Scn4aQ9ER60 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Scn4aQ9ER60 Rab17-204ENSMUST00000131428 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Scn4aQ9ER60 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Scn4aQ9ER60 Akt2-202ENSMUST00000085917 1392 ntTSL 5 BASIC20.39■□□□□ 0.85
Scn4aQ9ER60 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Scn4aQ9ER60 Capns2-201ENSMUST00000104947 1005 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
Scn4aQ9ER60 Gm14209-201ENSMUST00000154946 462 ntTSL 5 BASIC20.39■□□□□ 0.85
Scn4aQ9ER60 Treml1-201ENSMUST00000024792 1235 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Scn4aQ9ER60 Tomm7-201ENSMUST00000030851 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Scn4aQ9ER60 Tex13c3-201ENSMUST00000089246 876 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Scn4aQ9ER60 Pdia4-201ENSMUST00000077290 2399 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Scn4aQ9ER60 Gm36445-203ENSMUST00000209951 1597 ntTSL 5 BASIC20.38■□□□□ 0.85
Scn4aQ9ER60 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Scn4aQ9ER60 A4galt-202ENSMUST00000164614 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Scn4aQ9ER60 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Scn4aQ9ER60 Gm12349-201ENSMUST00000153030 657 ntTSL 3 BASIC20.38■□□□□ 0.85
Scn4aQ9ER60 Med10-201ENSMUST00000022089 913 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Scn4aQ9ER60 Tmem40-201ENSMUST00000072933 1272 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
Scn4aQ9ER60 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Scn4aQ9ER60 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Scn4aQ9ER60 Mpl-203ENSMUST00000106375 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Scn4aQ9ER60 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Scn4aQ9ER60 Cyp2t4-202ENSMUST00000164093 1512 ntAPPRIS P2 TSL 5 BASIC20.37■□□□□ 0.85
Scn4aQ9ER60 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Scn4aQ9ER60 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
Scn4aQ9ER60 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Scn4aQ9ER60 Gm12928-201ENSMUST00000117115 573 ntBASIC20.37■□□□□ 0.85
Scn4aQ9ER60 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
Scn4aQ9ER60 Gm27501-201ENSMUST00000183599 107 ntBASIC20.37■□□□□ 0.85
Scn4aQ9ER60 Mpv17-209ENSMUST00000202241 903 ntAPPRIS ALT1 TSL 3 BASIC20.37■□□□□ 0.85
Scn4aQ9ER60 Cts7-204ENSMUST00000225321 1257 ntBASIC20.37■□□□□ 0.85
Scn4aQ9ER60 2310026I22Rik-201ENSMUST00000180941 1300 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Scn4aQ9ER60 Rcn3-201ENSMUST00000019683 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Scn4aQ9ER60 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Scn4aQ9ER60 Apbb1-215ENSMUST00000190369 1882 ntTSL 5 BASIC20.37■□□□□ 0.85
Scn4aQ9ER60 Clcc1-201ENSMUST00000029483 2224 ntAPPRIS P3 TSL 5 BASIC20.37■□□□□ 0.85
Scn4aQ9ER60 Lamtor2-202ENSMUST00000119002 568 ntTSL 2 BASIC20.37■□□□□ 0.85
Scn4aQ9ER60 Ak6-205ENSMUST00000190729 1184 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Scn4aQ9ER60 Gm38000-201ENSMUST00000192390 1215 ntBASIC20.37■□□□□ 0.85
Scn4aQ9ER60 Gm44066-201ENSMUST00000203263 519 ntTSL 3 BASIC20.37■□□□□ 0.85
Scn4aQ9ER60 Gm13075-202ENSMUST00000149247 1621 ntTSL 5 BASIC20.36■□□□□ 0.85
Scn4aQ9ER60 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Scn4aQ9ER60 Eci2-211ENSMUST00000171229 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Scn4aQ9ER60 Lims1-203ENSMUST00000105468 1205 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Scn4aQ9ER60 Tmem255b-202ENSMUST00000167505 1219 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 32.8 ms