Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Stk40-201ENSMUST00000094761 3492 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cdc40Q9DC48 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Cdc40Q9DC48 Tbc1d20-201ENSMUST00000028963 3386 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cdc40Q9DC48 Pomgnt2-206ENSMUST00000216669 2504 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cdc40Q9DC48 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cdc40Q9DC48 Gbe1-203ENSMUST00000163832 2984 ntAPPRIS P5 TSL 5 BASIC14.11□□□□□ -0.15
Cdc40Q9DC48 Foxp2-207ENSMUST00000115477 6760 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cdc40Q9DC48 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Cdc40Q9DC48 Pspc1-202ENSMUST00000163924 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cdc40Q9DC48 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cdc40Q9DC48 Tmx4-203ENSMUST00000110120 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cdc40Q9DC48 Gm14494-201ENSMUST00000118786 435 ntBASIC14.11□□□□□ -0.15
Cdc40Q9DC48 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cdc40Q9DC48 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC14.11□□□□□ -0.15
Cdc40Q9DC48 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cdc40Q9DC48 Gm25925-201ENSMUST00000158314 306 ntBASIC14.11□□□□□ -0.15
Cdc40Q9DC48 Map2k3-201ENSMUST00000019076 2198 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cdc40Q9DC48 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Cdc40Q9DC48 CT943659.1-201ENSMUST00000215459 326 ntBASIC14.11□□□□□ -0.15
Cdc40Q9DC48 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cdc40Q9DC48 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cdc40Q9DC48 Pcgf5-211ENSMUST00000225920 6443 ntBASIC14.11□□□□□ -0.15
Cdc40Q9DC48 Macrod2-201ENSMUST00000043836 3552 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Cdc40Q9DC48 Atl1-201ENSMUST00000021466 5150 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cdc40Q9DC48 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cdc40Q9DC48 H2-K1-201ENSMUST00000025181 1605 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cdc40Q9DC48 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cdc40Q9DC48 Aptx-202ENSMUST00000068125 5383 ntAPPRIS P4 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cdc40Q9DC48 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Cdc40Q9DC48 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cdc40Q9DC48 Pcdh20-201ENSMUST00000061628 5241 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cdc40Q9DC48 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cdc40Q9DC48 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cdc40Q9DC48 Grk6-207ENSMUST00000225925 2769 ntBASIC14.11□□□□□ -0.15
Cdc40Q9DC48 Gm3045-201ENSMUST00000212844 1825 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Cdc40Q9DC48 Asic1-205ENSMUST00000228185 1818 ntBASIC14.11□□□□□ -0.15
Cdc40Q9DC48 Fyn-201ENSMUST00000063091 3562 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Cdc40Q9DC48 Asic4-201ENSMUST00000037708 2464 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cdc40Q9DC48 Maged1-201ENSMUST00000026142 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cdc40Q9DC48 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cdc40Q9DC48 Nav1-207ENSMUST00000190298 8557 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cdc40Q9DC48 Cd151-203ENSMUST00000177840 1708 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Cdc40Q9DC48 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cdc40Q9DC48 Slc4a5-202ENSMUST00000113899 5039 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Cdc40Q9DC48 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cdc40Q9DC48 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Cdc40Q9DC48 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cdc40Q9DC48 Gemin5-202ENSMUST00000102711 4919 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Cdc40Q9DC48 Susd6-201ENSMUST00000068519 4977 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cdc40Q9DC48 Arid4b-201ENSMUST00000039538 5844 ntTSL 5 BASIC14.1□□□□□ -0.15
Cdc40Q9DC48 Clstn1-202ENSMUST00000105691 4459 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cdc40Q9DC48 Thap7-201ENSMUST00000100125 1248 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cdc40Q9DC48 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Cdc40Q9DC48 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC14.1□□□□□ -0.15
Cdc40Q9DC48 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC14.1□□□□□ -0.15
Cdc40Q9DC48 Gm15598-201ENSMUST00000156965 763 ntTSL 5 BASIC14.1□□□□□ -0.15
Cdc40Q9DC48 Gm9727-201ENSMUST00000161387 555 ntBASIC14.1□□□□□ -0.15
Cdc40Q9DC48 Hsf4-203ENSMUST00000172525 1276 ntTSL 5 BASIC14.1□□□□□ -0.15
Cdc40Q9DC48 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Cdc40Q9DC48 Dpf3-205ENSMUST00000177801 1092 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Cdc40Q9DC48 1110035H17Rik-202ENSMUST00000205672 1231 ntBASIC14.1□□□□□ -0.15
Cdc40Q9DC48 Vsig2-206ENSMUST00000215957 851 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Cdc40Q9DC48 AC159106.1-201ENSMUST00000224421 690 ntBASIC14.1□□□□□ -0.15
Cdc40Q9DC48 Pfn3-201ENSMUST00000054146 545 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
Cdc40Q9DC48 Psmb4-201ENSMUST00000005923 1183 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cdc40Q9DC48 Ino80-201ENSMUST00000049920 6354 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Cdc40Q9DC48 Sox1ot-202ENSMUST00000186174 7420 ntTSL 5 BASIC14.1□□□□□ -0.15
Cdc40Q9DC48 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cdc40Q9DC48 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cdc40Q9DC48 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Cdc40Q9DC48 Gm31774-201ENSMUST00000212910 1366 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Cdc40Q9DC48 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cdc40Q9DC48 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cdc40Q9DC48 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cdc40Q9DC48 Tnfrsf13c-202ENSMUST00000109535 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cdc40Q9DC48 Slc33a1-203ENSMUST00000161659 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cdc40Q9DC48 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC14.09□□□□□ -0.15
Cdc40Q9DC48 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Cdc40Q9DC48 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Cdc40Q9DC48 Gm11467-201ENSMUST00000129407 674 ntTSL 3 BASIC14.09□□□□□ -0.15
Cdc40Q9DC48 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Cdc40Q9DC48 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cdc40Q9DC48 Nptn-211ENSMUST00000177064 582 ntTSL 5 BASIC14.09□□□□□ -0.15
Cdc40Q9DC48 Tnp2-201ENSMUST00000051297 549 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cdc40Q9DC48 Klk14-201ENSMUST00000056329 1271 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cdc40Q9DC48 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cdc40Q9DC48 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC14.09□□□□□ -0.15
Cdc40Q9DC48 Mettl27-202ENSMUST00000068617 1685 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Cdc40Q9DC48 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cdc40Q9DC48 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cdc40Q9DC48 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cdc40Q9DC48 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC14.09□□□□□ -0.15
Cdc40Q9DC48 Kif7-203ENSMUST00000183846 4577 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Cdc40Q9DC48 Gm17018-201ENSMUST00000047057 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cdc40Q9DC48 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cdc40Q9DC48 Rell1-204ENSMUST00000154169 3241 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cdc40Q9DC48 Rab17-204ENSMUST00000131428 1557 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cdc40Q9DC48 Pcdha11-202ENSMUST00000115657 5360 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cdc40Q9DC48 Cdk2-201ENSMUST00000026415 2240 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cdc40Q9DC48 Dse-201ENSMUST00000048010 4389 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 22 ms