Protein–RNA interactions for Protein: Q99PQ2

Trim11, E3 ubiquitin-protein ligase TRIM11, mousemouse

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim11Q99PQ2 Gm8242-201ENSMUST00000193029 1420 ntBASIC17.31■□□□□ 0.36
Trim11Q99PQ2 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim11Q99PQ2 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim11Q99PQ2 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC17.31■□□□□ 0.36
Trim11Q99PQ2 Cep63-201ENSMUST00000093791 2696 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Trim11Q99PQ2 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Trim11Q99PQ2 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim11Q99PQ2 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC17.31■□□□□ 0.36
Trim11Q99PQ2 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim11Q99PQ2 Gm2308-201ENSMUST00000166539 1004 ntBASIC17.31■□□□□ 0.36
Trim11Q99PQ2 Gm34391-201ENSMUST00000203706 907 ntBASIC17.31■□□□□ 0.36
Trim11Q99PQ2 Slc44a5-201ENSMUST00000089948 4098 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim11Q99PQ2 Cyp2a5-201ENSMUST00000005685 2013 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim11Q99PQ2 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim11Q99PQ2 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim11Q99PQ2 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim11Q99PQ2 Alx4-201ENSMUST00000042078 5253 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim11Q99PQ2 Armc9-205ENSMUST00000131412 2160 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim11Q99PQ2 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Trim11Q99PQ2 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim11Q99PQ2 Cobl-201ENSMUST00000046755 5615 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim11Q99PQ2 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim11Q99PQ2 Gm34419-201ENSMUST00000211383 1387 ntTSL 5 BASIC17.3■□□□□ 0.36
Trim11Q99PQ2 Ttc16-202ENSMUST00000091059 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim11Q99PQ2 Gm29676-201ENSMUST00000222396 1689 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Trim11Q99PQ2 Ano8-201ENSMUST00000093450 3653 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim11Q99PQ2 Tpbg-201ENSMUST00000006559 3603 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim11Q99PQ2 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim11Q99PQ2 Zfp612-202ENSMUST00000212754 4863 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim11Q99PQ2 Endod1-201ENSMUST00000167549 4470 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim11Q99PQ2 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC17.3■□□□□ 0.36
Trim11Q99PQ2 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC17.3■□□□□ 0.36
Trim11Q99PQ2 Gm27459-201ENSMUST00000184860 107 ntBASIC17.3■□□□□ 0.36
Trim11Q99PQ2 AC110091.2-202ENSMUST00000216718 1148 ntTSL 5 BASIC17.3■□□□□ 0.36
Trim11Q99PQ2 AC159106.1-201ENSMUST00000224421 690 ntBASIC17.3■□□□□ 0.36
Trim11Q99PQ2 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC17.3■□□□□ 0.36
Trim11Q99PQ2 Pde4a-201ENSMUST00000003395 2524 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Trim11Q99PQ2 Nabp1-201ENSMUST00000027279 2838 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim11Q99PQ2 Cdh11-201ENSMUST00000075190 5647 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim11Q99PQ2 Ccdc137-201ENSMUST00000058370 2778 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim11Q99PQ2 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC17.3■□□□□ 0.36
Trim11Q99PQ2 Pum2-202ENSMUST00000111122 6311 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim11Q99PQ2 Per3-201ENSMUST00000103204 5999 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim11Q99PQ2 Synj2-210ENSMUST00000115791 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim11Q99PQ2 Pcyt1a-202ENSMUST00000104893 4951 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Trim11Q99PQ2 E330009J07Rik-202ENSMUST00000101492 6742 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim11Q99PQ2 Rsbn1-202ENSMUST00000068879 6712 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim11Q99PQ2 Zfp786-201ENSMUST00000058844 3191 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim11Q99PQ2 Cbln3-202ENSMUST00000172378 1438 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim11Q99PQ2 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim11Q99PQ2 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Trim11Q99PQ2 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim11Q99PQ2 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
Trim11Q99PQ2 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC17.29■□□□□ 0.36
Trim11Q99PQ2 Wdr1-205ENSMUST00000201260 2139 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Trim11Q99PQ2 Gm3928-201ENSMUST00000121141 1307 ntBASIC17.29■□□□□ 0.36
Trim11Q99PQ2 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim11Q99PQ2 Nfs1-202ENSMUST00000109600 709 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Trim11Q99PQ2 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Trim11Q99PQ2 Gm4189-202ENSMUST00000174167 367 ntTSL 3 BASIC17.29■□□□□ 0.36
Trim11Q99PQ2 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC17.29■□□□□ 0.36
Trim11Q99PQ2 CT009510.1-201ENSMUST00000227972 270 ntBASIC17.29■□□□□ 0.36
Trim11Q99PQ2 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim11Q99PQ2 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Trim11Q99PQ2 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim11Q99PQ2 Cpeb2-205ENSMUST00000169035 7050 ntAPPRIS P2 TSL 5 BASIC17.29■□□□□ 0.36
Trim11Q99PQ2 Frmd5-207ENSMUST00000138157 4230 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Trim11Q99PQ2 Kitl-202ENSMUST00000105283 5648 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim11Q99PQ2 Tox2-202ENSMUST00000109428 2947 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Trim11Q99PQ2 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim11Q99PQ2 Smyd4-201ENSMUST00000044530 3517 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim11Q99PQ2 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim11Q99PQ2 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Trim11Q99PQ2 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Trim11Q99PQ2 Ppp4r4-201ENSMUST00000021631 3964 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim11Q99PQ2 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim11Q99PQ2 Ahctf1-201ENSMUST00000027768 8506 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim11Q99PQ2 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Trim11Q99PQ2 Sphk1-211ENSMUST00000141798 1532 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim11Q99PQ2 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim11Q99PQ2 Fbxl8-201ENSMUST00000036221 1901 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim11Q99PQ2 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC17.28■□□□□ 0.36
Trim11Q99PQ2 Gm11453-201ENSMUST00000117318 1007 ntBASIC17.28■□□□□ 0.36
Trim11Q99PQ2 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim11Q99PQ2 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC17.28■□□□□ 0.36
Trim11Q99PQ2 Gm6089-201ENSMUST00000197666 938 ntBASIC17.28■□□□□ 0.36
Trim11Q99PQ2 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC17.28■□□□□ 0.36
Trim11Q99PQ2 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim11Q99PQ2 Atp6v0d1-201ENSMUST00000013304 1629 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim11Q99PQ2 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim11Q99PQ2 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim11Q99PQ2 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim11Q99PQ2 Rnf38-202ENSMUST00000098098 5061 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Trim11Q99PQ2 Ube2d3-210ENSMUST00000197539 2515 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim11Q99PQ2 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim11Q99PQ2 Eif4g1-201ENSMUST00000044783 5444 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim11Q99PQ2 Nrxn1-204ENSMUST00000159778 3414 ntTSL 5 BASIC17.27■□□□□ 0.36
Trim11Q99PQ2 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim11Q99PQ2 Csrnp1-203ENSMUST00000214058 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim11Q99PQ2 Atl1-201ENSMUST00000021466 5150 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 20.6 ms