Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
Msh4Q99MT2 Nat8b-ps-201ENSMUST00000162660 699 ntBASIC14.8□□□□□ -0.04
Msh4Q99MT2 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC14.8□□□□□ -0.04
Msh4Q99MT2 Gm45144-201ENSMUST00000207473 354 ntTSL 5 BASIC14.8□□□□□ -0.04
Msh4Q99MT2 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC14.8□□□□□ -0.04
Msh4Q99MT2 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Msh4Q99MT2 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
Msh4Q99MT2 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Msh4Q99MT2 Fgfr1op2-203ENSMUST00000067404 2766 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Msh4Q99MT2 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC14.8□□□□□ -0.04
Msh4Q99MT2 Itsn1-202ENSMUST00000064797 7418 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
Msh4Q99MT2 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Msh4Q99MT2 4933421O10Rik-201ENSMUST00000155691 3847 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Msh4Q99MT2 Acss3-201ENSMUST00000044668 2494 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Msh4Q99MT2 Vav1-204ENSMUST00000169220 2810 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Msh4Q99MT2 Kif1c-203ENSMUST00000102554 6684 ntAPPRIS P2 TSL 5 BASIC14.79□□□□□ -0.04
Msh4Q99MT2 Tgfa-201ENSMUST00000032066 4527 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Msh4Q99MT2 Adgrb2-208ENSMUST00000121049 4871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Msh4Q99MT2 Nfat5-203ENSMUST00000125721 5899 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
Msh4Q99MT2 Per3-201ENSMUST00000103204 5999 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Msh4Q99MT2 Gm12355-201ENSMUST00000104933 1311 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
Msh4Q99MT2 Cep19-202ENSMUST00000115168 1718 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Msh4Q99MT2 Gm7222-201ENSMUST00000117512 906 ntBASIC14.79□□□□□ -0.04
Msh4Q99MT2 Gm8344-201ENSMUST00000119813 856 ntBASIC14.79□□□□□ -0.04
Msh4Q99MT2 Mapk8ip3-207ENSMUST00000121723 5410 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Msh4Q99MT2 Kctd14-202ENSMUST00000121987 1210 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Msh4Q99MT2 Sec22b-202ENSMUST00000122288 1177 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Msh4Q99MT2 Csrp3-202ENSMUST00000167786 899 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Msh4Q99MT2 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Msh4Q99MT2 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Msh4Q99MT2 4933433G15Rik-201ENSMUST00000180533 1481 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Msh4Q99MT2 Gm27646-201ENSMUST00000183989 110 ntBASIC14.79□□□□□ -0.04
Msh4Q99MT2 Gm20324-201ENSMUST00000186291 1118 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Msh4Q99MT2 AW822252-206ENSMUST00000208904 237 ntBASIC14.79□□□□□ -0.04
Msh4Q99MT2 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC14.79□□□□□ -0.04
Msh4Q99MT2 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC14.79□□□□□ -0.04
Msh4Q99MT2 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC14.79□□□□□ -0.04
Msh4Q99MT2 Sod1-201ENSMUST00000023707 646 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Msh4Q99MT2 Atp11b-201ENSMUST00000029257 4868 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Msh4Q99MT2 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Msh4Q99MT2 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Msh4Q99MT2 Lrrc24-202ENSMUST00000049956 1904 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Msh4Q99MT2 Casc4-201ENSMUST00000078752 4215 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Msh4Q99MT2 Piezo1-209ENSMUST00000156333 8219 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Msh4Q99MT2 Piezo1-201ENSMUST00000067252 8216 ntAPPRIS P2 TSL 5 BASIC14.79□□□□□ -0.04
Msh4Q99MT2 Eif4g1-206ENSMUST00000115463 5378 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Msh4Q99MT2 Usp35-201ENSMUST00000139582 4262 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
Msh4Q99MT2 Xylt2-201ENSMUST00000116349 3442 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Msh4Q99MT2 Map6-203ENSMUST00000122101 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Msh4Q99MT2 Rgl1-203ENSMUST00000111859 5092 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
Msh4Q99MT2 Cpxm1-201ENSMUST00000028897 2366 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Msh4Q99MT2 Gjb6-201ENSMUST00000039380 2105 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Msh4Q99MT2 Slk-202ENSMUST00000051691 4239 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
Msh4Q99MT2 Pla2g16-203ENSMUST00000136756 1901 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Msh4Q99MT2 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Msh4Q99MT2 Gm5922-201ENSMUST00000214963 1723 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Msh4Q99MT2 Derl1-201ENSMUST00000022993 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Msh4Q99MT2 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Msh4Q99MT2 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Msh4Q99MT2 Stard7-201ENSMUST00000110374 1530 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Msh4Q99MT2 Rnf114-202ENSMUST00000109214 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Msh4Q99MT2 Itga8-201ENSMUST00000028106 5812 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Msh4Q99MT2 Dnajc2-202ENSMUST00000115192 1132 ntTSL 2 BASIC14.78□□□□□ -0.04
Msh4Q99MT2 1700039E22Rik-201ENSMUST00000174082 770 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Msh4Q99MT2 Gm43514-201ENSMUST00000198852 424 ntBASIC14.78□□□□□ -0.04
Msh4Q99MT2 1700016B15Rik-201ENSMUST00000209027 733 ntBASIC14.78□□□□□ -0.04
Msh4Q99MT2 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Msh4Q99MT2 Syce1l-204ENSMUST00000212269 753 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Msh4Q99MT2 AV026068-213ENSMUST00000223675 1171 ntBASIC14.78□□□□□ -0.04
Msh4Q99MT2 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Msh4Q99MT2 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Msh4Q99MT2 Tesk2-203ENSMUST00000106459 2444 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Msh4Q99MT2 Agbl5-213ENSMUST00000201917 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Msh4Q99MT2 Foxp2-207ENSMUST00000115477 6760 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
Msh4Q99MT2 2810474O19Rik-202ENSMUST00000100765 5356 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Msh4Q99MT2 Repin1-207ENSMUST00000163452 2959 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
Msh4Q99MT2 Mettl22-201ENSMUST00000046470 1825 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Msh4Q99MT2 Crhbp-202ENSMUST00000221025 1779 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Msh4Q99MT2 Dse-201ENSMUST00000048010 4389 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Msh4Q99MT2 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Msh4Q99MT2 Pqlc3-208ENSMUST00000222203 1706 ntTSL 5 BASIC14.78□□□□□ -0.04
Msh4Q99MT2 Pwwp2a-201ENSMUST00000061070 3277 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Msh4Q99MT2 Raet1e-204ENSMUST00000181645 1579 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Msh4Q99MT2 Ric8b-201ENSMUST00000038523 3069 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Msh4Q99MT2 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC14.77□□□□□ -0.04
Msh4Q99MT2 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Msh4Q99MT2 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
Msh4Q99MT2 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Msh4Q99MT2 Mis12-206ENSMUST00000164220 1416 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Msh4Q99MT2 Gm28111-201ENSMUST00000187786 1393 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Msh4Q99MT2 Sympk-201ENSMUST00000023882 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Msh4Q99MT2 Hps1-201ENSMUST00000026194 2647 ntAPPRIS P3 TSL 5 BASIC14.77□□□□□ -0.04
Msh4Q99MT2 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
Msh4Q99MT2 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC14.77□□□□□ -0.05
Msh4Q99MT2 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC14.77□□□□□ -0.05
Msh4Q99MT2 Ccl27a-217ENSMUST00000155240 343 ntTSL 2 BASIC14.77□□□□□ -0.05
Msh4Q99MT2 Timm23-206ENSMUST00000170331 777 ntTSL 3 BASIC14.77□□□□□ -0.05
Msh4Q99MT2 AC159106.1-201ENSMUST00000224421 690 ntBASIC14.77□□□□□ -0.05
Msh4Q99MT2 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Msh4Q99MT2 Psma5-201ENSMUST00000090569 1239 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 250.7 ms