Protein–RNA interactions for Protein: Q8R1N4

Nudcd3, NudC domain-containing protein 3, mousemouse

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nudcd3Q8R1N4 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Nudcd3Q8R1N4 Gm12620-201ENSMUST00000119791 1986 ntBASIC15.2■□□□□ 0.02
Nudcd3Q8R1N4 Gm12612-201ENSMUST00000140182 1986 ntBASIC15.2■□□□□ 0.02
Nudcd3Q8R1N4 Inha-201ENSMUST00000037330 1475 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Nudcd3Q8R1N4 Ghr-201ENSMUST00000069451 4175 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Nudcd3Q8R1N4 Foxa1-201ENSMUST00000044380 3191 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Nudcd3Q8R1N4 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC15.2■□□□□ 0.02
Nudcd3Q8R1N4 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nudcd3Q8R1N4 Nacad-201ENSMUST00000045713 4892 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nudcd3Q8R1N4 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nudcd3Q8R1N4 F2-201ENSMUST00000028681 1988 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nudcd3Q8R1N4 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
Nudcd3Q8R1N4 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Nudcd3Q8R1N4 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nudcd3Q8R1N4 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC15.19■□□□□ 0.02
Nudcd3Q8R1N4 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC15.19■□□□□ 0.02
Nudcd3Q8R1N4 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Nudcd3Q8R1N4 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nudcd3Q8R1N4 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nudcd3Q8R1N4 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
Nudcd3Q8R1N4 Camta1-203ENSMUST00000105668 4962 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Nudcd3Q8R1N4 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC15.19■□□□□ 0.02
Nudcd3Q8R1N4 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nudcd3Q8R1N4 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Nudcd3Q8R1N4 Dis3-201ENSMUST00000042471 5150 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Nudcd3Q8R1N4 Ablim2-205ENSMUST00000114205 2579 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Nudcd3Q8R1N4 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC15.19■□□□□ 0.02
Nudcd3Q8R1N4 Slit1-202ENSMUST00000166496 4556 ntTSL 5 BASIC15.19■□□□□ 0.02
Nudcd3Q8R1N4 Slc52a3-203ENSMUST00000109859 2204 ntTSL 5 BASIC15.19■□□□□ 0.02
Nudcd3Q8R1N4 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Nudcd3Q8R1N4 Map2k7-202ENSMUST00000062686 3525 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Nudcd3Q8R1N4 Pex3-202ENSMUST00000105539 1961 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Nudcd3Q8R1N4 Acbd5-215ENSMUST00000228050 4804 ntAPPRIS ALT2 BASIC15.18■□□□□ 0.02
Nudcd3Q8R1N4 Otud6b-201ENSMUST00000117268 3266 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Nudcd3Q8R1N4 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Nudcd3Q8R1N4 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Nudcd3Q8R1N4 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Nudcd3Q8R1N4 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Nudcd3Q8R1N4 Txndc11-202ENSMUST00000118362 4248 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Nudcd3Q8R1N4 Camsap2-202ENSMUST00000192001 6329 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Nudcd3Q8R1N4 Fbxl12-205ENSMUST00000140702 1555 ntBASIC15.18■□□□□ 0.02
Nudcd3Q8R1N4 Olfr718-ps1-203ENSMUST00000215102 4913 ntAPPRIS P5 TSL 5 BASIC15.18■□□□□ 0.02
Nudcd3Q8R1N4 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Nudcd3Q8R1N4 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Nudcd3Q8R1N4 Nhs-202ENSMUST00000087085 8805 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Nudcd3Q8R1N4 Wtap-201ENSMUST00000007007 2051 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Nudcd3Q8R1N4 Ctnnb1-201ENSMUST00000007130 3623 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Nudcd3Q8R1N4 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Nudcd3Q8R1N4 Ahdc1-202ENSMUST00000105914 5898 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
Nudcd3Q8R1N4 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Nudcd3Q8R1N4 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Nudcd3Q8R1N4 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Nudcd3Q8R1N4 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Nudcd3Q8R1N4 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Nudcd3Q8R1N4 Gm45844-204ENSMUST00000209833 1524 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
Nudcd3Q8R1N4 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Nudcd3Q8R1N4 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Nudcd3Q8R1N4 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
Nudcd3Q8R1N4 Lmna-203ENSMUST00000120377 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Nudcd3Q8R1N4 Mxra8-201ENSMUST00000030947 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Nudcd3Q8R1N4 Cpz-201ENSMUST00000038676 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Nudcd3Q8R1N4 Eif3f-201ENSMUST00000033342 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Nudcd3Q8R1N4 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Nudcd3Q8R1N4 Fech-201ENSMUST00000025484 2901 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Nudcd3Q8R1N4 Tsc22d1-202ENSMUST00000048371 4818 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Nudcd3Q8R1N4 Mef2d-204ENSMUST00000119251 3488 ntTSL 5 BASIC15.17■□□□□ 0.02
Nudcd3Q8R1N4 Ifrd1-201ENSMUST00000001672 3378 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Nudcd3Q8R1N4 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Nudcd3Q8R1N4 Fgfr3-201ENSMUST00000067150 4218 ntAPPRIS P4 TSL 1 (best) BASIC15.17■□□□□ 0.02
Nudcd3Q8R1N4 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
Nudcd3Q8R1N4 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Nudcd3Q8R1N4 Gm10013-201ENSMUST00000106074 672 ntBASIC15.17■□□□□ 0.02
Nudcd3Q8R1N4 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Nudcd3Q8R1N4 Gm15565-201ENSMUST00000118890 427 ntBASIC15.17■□□□□ 0.02
Nudcd3Q8R1N4 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Nudcd3Q8R1N4 Gm12973-201ENSMUST00000143967 607 ntTSL 5 BASIC15.17■□□□□ 0.02
Nudcd3Q8R1N4 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Nudcd3Q8R1N4 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Nudcd3Q8R1N4 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC15.17■□□□□ 0.02
Nudcd3Q8R1N4 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC15.17■□□□□ 0.02
Nudcd3Q8R1N4 Cebpzos-201ENSMUST00000063817 753 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
Nudcd3Q8R1N4 Acss1-201ENSMUST00000028944 3618 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Nudcd3Q8R1N4 Ptprv-210ENSMUST00000183317 6108 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Nudcd3Q8R1N4 Rnf11-201ENSMUST00000030284 4061 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Nudcd3Q8R1N4 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Nudcd3Q8R1N4 Sema5b-202ENSMUST00000120756 4646 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Nudcd3Q8R1N4 Lifr-201ENSMUST00000067190 4143 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
Nudcd3Q8R1N4 Tgfb1i1-207ENSMUST00000167965 1746 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Nudcd3Q8R1N4 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Nudcd3Q8R1N4 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Nudcd3Q8R1N4 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
Nudcd3Q8R1N4 L2hgdh-201ENSMUST00000021370 3340 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Nudcd3Q8R1N4 Irf8-205ENSMUST00000162001 2270 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Nudcd3Q8R1N4 Map2k3-201ENSMUST00000019076 2198 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Nudcd3Q8R1N4 Pcdh10-201ENSMUST00000166126 7081 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Nudcd3Q8R1N4 Fam169b-206ENSMUST00000210558 2815 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
Nudcd3Q8R1N4 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Nudcd3Q8R1N4 Dnaja1-210ENSMUST00000164233 5622 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
Nudcd3Q8R1N4 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Nudcd3Q8R1N4 Itgb1-201ENSMUST00000090006 3815 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 38.9 ms