Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Usp28Q5I043 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Usp28Q5I043 Tssc4-201ENSMUST00000060433 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Usp28Q5I043 Vcan-205ENSMUST00000159337 2273 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Usp28Q5I043 Gm21981-201ENSMUST00000143789 2721 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Usp28Q5I043 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Usp28Q5I043 Pid1-207ENSMUST00000177458 2521 ntTSL 2 BASIC17.25■□□□□ 0.35
Usp28Q5I043 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Usp28Q5I043 Mus81-202ENSMUST00000124334 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Usp28Q5I043 AC157650.3-201ENSMUST00000225058 1476 ntBASIC17.25■□□□□ 0.35
Usp28Q5I043 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Usp28Q5I043 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Usp28Q5I043 Iqcd-201ENSMUST00000069259 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Usp28Q5I043 Syt6-201ENSMUST00000090697 4416 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Usp28Q5I043 Mapk8ip1-202ENSMUST00000111279 3274 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Usp28Q5I043 Bmp2k-201ENSMUST00000035635 7387 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Usp28Q5I043 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Usp28Q5I043 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Usp28Q5I043 Plekha4-201ENSMUST00000051810 2660 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
Usp28Q5I043 Dlk2-203ENSMUST00000166617 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Usp28Q5I043 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Usp28Q5I043 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC17.24■□□□□ 0.35
Usp28Q5I043 Wasf2-201ENSMUST00000084241 5642 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usp28Q5I043 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usp28Q5I043 Foxa1-201ENSMUST00000044380 3191 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usp28Q5I043 Gm37297-201ENSMUST00000192974 2384 ntBASIC17.24■□□□□ 0.35
Usp28Q5I043 Tlr2-201ENSMUST00000029623 3014 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usp28Q5I043 Fbxl12-205ENSMUST00000140702 1555 ntBASIC17.24■□□□□ 0.35
Usp28Q5I043 Slc8b1-201ENSMUST00000068326 2898 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usp28Q5I043 4930429H19Rik-201ENSMUST00000205260 1818 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Usp28Q5I043 Spdef-202ENSMUST00000114870 2070 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Usp28Q5I043 A830012C17Rik-201ENSMUST00000131498 1665 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Usp28Q5I043 Zdhhc15-201ENSMUST00000042070 5509 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usp28Q5I043 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC17.24■□□□□ 0.35
Usp28Q5I043 Gm13403-202ENSMUST00000134271 674 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Usp28Q5I043 Ank2-226ENSMUST00000189368 339 ntBASIC17.24■□□□□ 0.35
Usp28Q5I043 Gm13830-205ENSMUST00000201195 1155 ntBASIC17.24■□□□□ 0.35
Usp28Q5I043 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC17.24■□□□□ 0.35
Usp28Q5I043 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usp28Q5I043 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC17.24■□□□□ 0.35
Usp28Q5I043 Atp5o-201ENSMUST00000023677 838 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usp28Q5I043 Anxa4-201ENSMUST00000001187 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usp28Q5I043 Nptn-201ENSMUST00000085651 2024 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Usp28Q5I043 Scrt1-201ENSMUST00000096365 4010 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usp28Q5I043 Wdr26-207ENSMUST00000162819 6619 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usp28Q5I043 Chuk-201ENSMUST00000026217 3502 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usp28Q5I043 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Usp28Q5I043 Eva1c-203ENSMUST00000099548 1948 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Usp28Q5I043 Fam178b-201ENSMUST00000114981 1659 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usp28Q5I043 Tmem81-202ENSMUST00000188789 1751 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Usp28Q5I043 Orai3-203ENSMUST00000121504 2141 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Usp28Q5I043 Cct6b-202ENSMUST00000100722 1871 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Usp28Q5I043 Gm43697-201ENSMUST00000199637 2581 ntBASIC17.23■□□□□ 0.35
Usp28Q5I043 Cdr2l-201ENSMUST00000053288 3700 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usp28Q5I043 Kctd14-204ENSMUST00000205577 2310 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usp28Q5I043 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usp28Q5I043 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC17.23■□□□□ 0.35
Usp28Q5I043 AC159301.1-201ENSMUST00000225130 1182 ntBASIC17.23■□□□□ 0.35
Usp28Q5I043 Ap4b1-204ENSMUST00000106824 2412 ntTSL 5 BASIC17.23■□□□□ 0.35
Usp28Q5I043 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usp28Q5I043 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usp28Q5I043 Tle3-218ENSMUST00000178113 5205 ntTSL 5 BASIC17.23■□□□□ 0.35
Usp28Q5I043 Elf3-202ENSMUST00000185752 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usp28Q5I043 Nfe2l2-201ENSMUST00000102672 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usp28Q5I043 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Usp28Q5I043 St3gal3-202ENSMUST00000097912 2143 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Usp28Q5I043 Miga1-204ENSMUST00000199334 4024 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Usp28Q5I043 Kif21a-204ENSMUST00000109287 6124 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usp28Q5I043 Kif21a-205ENSMUST00000109288 6142 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usp28Q5I043 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usp28Q5I043 Penk-201ENSMUST00000070375 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Usp28Q5I043 Usp30-201ENSMUST00000031588 4604 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Usp28Q5I043 Tmod2-208ENSMUST00000215614 1921 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Usp28Q5I043 Zfp668-201ENSMUST00000054415 5768 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Usp28Q5I043 Olfr317-202ENSMUST00000215513 2769 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Usp28Q5I043 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Usp28Q5I043 Mrpl58-202ENSMUST00000103036 749 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Usp28Q5I043 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC17.22■□□□□ 0.35
Usp28Q5I043 Gm13418-201ENSMUST00000119097 944 ntBASIC17.22■□□□□ 0.35
Usp28Q5I043 Gm4535-201ENSMUST00000182274 558 ntBASIC17.22■□□□□ 0.35
Usp28Q5I043 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Usp28Q5I043 Gm10355-201ENSMUST00000097146 517 ntBASIC17.22■□□□□ 0.35
Usp28Q5I043 Mrgpra9-201ENSMUST00000098436 1049 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Usp28Q5I043 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Usp28Q5I043 Scara5-202ENSMUST00000069226 3262 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Usp28Q5I043 Gpc6-201ENSMUST00000078849 1668 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Usp28Q5I043 Tomm6os-201ENSMUST00000155812 2944 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Usp28Q5I043 Ctnnb1-201ENSMUST00000007130 3623 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Usp28Q5I043 Gpd2-202ENSMUST00000112618 5759 ntTSL 5 BASIC17.22■□□□□ 0.35
Usp28Q5I043 Nyap1-204ENSMUST00000212152 2499 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Usp28Q5I043 Slc39a11-202ENSMUST00000071539 2664 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Usp28Q5I043 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Usp28Q5I043 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Usp28Q5I043 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Usp28Q5I043 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Usp28Q5I043 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Usp28Q5I043 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
Usp28Q5I043 Ssfa2-202ENSMUST00000111785 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Usp28Q5I043 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Usp28Q5I043 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 34.4 ms