Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Gabra5-202ENSMUST00000206382 2607 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
Ddb1Q3U1J4 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Ddb1Q3U1J4 Bola2-202ENSMUST00000106369 642 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Ddb1Q3U1J4 Mrps24-205ENSMUST00000154330 995 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Ddb1Q3U1J4 Coa6-202ENSMUST00000211868 564 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Ddb1Q3U1J4 Dupd1-202ENSMUST00000224735 548 ntBASIC19.15■□□□□ 0.66
Ddb1Q3U1J4 Rpsa-ps10-201ENSMUST00000057740 885 ntBASIC19.15■□□□□ 0.66
Ddb1Q3U1J4 Uqcr10-201ENSMUST00000058407 434 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Ddb1Q3U1J4 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Ddb1Q3U1J4 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC19.15■□□□□ 0.66
Ddb1Q3U1J4 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Ddb1Q3U1J4 Cnih3-201ENSMUST00000027795 2668 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Ddb1Q3U1J4 Wnt5b-202ENSMUST00000118120 2115 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Ddb1Q3U1J4 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
Ddb1Q3U1J4 Ankrd27-202ENSMUST00000186245 1926 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Ddb1Q3U1J4 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
Ddb1Q3U1J4 Spaca3-202ENSMUST00000103223 947 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Ddb1Q3U1J4 Otx2os1-202ENSMUST00000183803 743 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Ddb1Q3U1J4 Inpp4a-213ENSMUST00000193774 1243 ntTSL 5 BASIC19.14■□□□□ 0.65
Ddb1Q3U1J4 Gas2l3-207ENSMUST00000220128 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Ddb1Q3U1J4 Timm9-206ENSMUST00000221367 836 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
Ddb1Q3U1J4 Tnfrsf19-205ENSMUST00000225730 744 ntAPPRIS ALT2 BASIC19.14■□□□□ 0.65
Ddb1Q3U1J4 Tmco5b-201ENSMUST00000040856 1237 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Ddb1Q3U1J4 Hilpda-201ENSMUST00000054445 982 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Ddb1Q3U1J4 Prr23a2-201ENSMUST00000071302 881 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
Ddb1Q3U1J4 Gm6471-201ENSMUST00000097935 805 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Ddb1Q3U1J4 Arf2-201ENSMUST00000057921 2242 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Ddb1Q3U1J4 Nt5c3b-205ENSMUST00000107399 1427 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Ddb1Q3U1J4 4930425O10Rik-201ENSMUST00000197761 1418 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Ddb1Q3U1J4 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Ddb1Q3U1J4 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Ddb1Q3U1J4 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
Ddb1Q3U1J4 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Ddb1Q3U1J4 8430429K09Rik-204ENSMUST00000146456 1675 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Ddb1Q3U1J4 9530082P21Rik-202ENSMUST00000181291 1798 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Ddb1Q3U1J4 Fbxw2-205ENSMUST00000113078 1872 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Ddb1Q3U1J4 Gna12-201ENSMUST00000000153 3416 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Ddb1Q3U1J4 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Ddb1Q3U1J4 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Ddb1Q3U1J4 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Ddb1Q3U1J4 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
Ddb1Q3U1J4 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
Ddb1Q3U1J4 Ighv4-1-201ENSMUST00000103464 414 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
Ddb1Q3U1J4 Nmi-202ENSMUST00000112705 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Ddb1Q3U1J4 Ube2j2-206ENSMUST00000118192 922 ntTSL 5 BASIC19.13■□□□□ 0.65
Ddb1Q3U1J4 Kif16bos-201ENSMUST00000124774 495 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Ddb1Q3U1J4 9130410C08Rik-201ENSMUST00000155499 1088 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Ddb1Q3U1J4 Gm15853-201ENSMUST00000160268 556 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Ddb1Q3U1J4 Commd6-203ENSMUST00000168587 519 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Ddb1Q3U1J4 Gm6007-201ENSMUST00000208170 823 ntBASIC19.13■□□□□ 0.65
Ddb1Q3U1J4 Crybb2-201ENSMUST00000031295 724 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Ddb1Q3U1J4 Akt2-202ENSMUST00000085917 1392 ntTSL 5 BASIC19.13■□□□□ 0.65
Ddb1Q3U1J4 Slc7a15-204ENSMUST00000165657 1467 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Ddb1Q3U1J4 Slc7a15-202ENSMUST00000095863 1467 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Ddb1Q3U1J4 Slc35g3-201ENSMUST00000102586 1618 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Ddb1Q3U1J4 Gm19684-201ENSMUST00000173128 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Ddb1Q3U1J4 Prrxl1-203ENSMUST00000187377 1629 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Ddb1Q3U1J4 Myl12a-206ENSMUST00000148960 1937 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Ddb1Q3U1J4 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Ddb1Q3U1J4 Cct7-201ENSMUST00000032078 2441 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Ddb1Q3U1J4 Prmt6-203ENSMUST00000190378 3051 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Ddb1Q3U1J4 Acbd6-201ENSMUST00000035560 5592 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Ddb1Q3U1J4 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC19.12■□□□□ 0.65
Ddb1Q3U1J4 Wnt5b-201ENSMUST00000117171 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Ddb1Q3U1J4 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Ddb1Q3U1J4 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Ddb1Q3U1J4 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
Ddb1Q3U1J4 H2-Q4-201ENSMUST00000081435 1793 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Ddb1Q3U1J4 Zfp691-204ENSMUST00000179290 1721 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Ddb1Q3U1J4 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Ddb1Q3U1J4 Lcn5-203ENSMUST00000100313 660 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Ddb1Q3U1J4 Crip3-202ENSMUST00000113465 1035 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Ddb1Q3U1J4 Chchd7-207ENSMUST00000121210 548 ntTSL 2 BASIC19.12■□□□□ 0.65
Ddb1Q3U1J4 Gm11918-201ENSMUST00000121660 179 ntBASIC19.12■□□□□ 0.65
Ddb1Q3U1J4 1700021A07Rik-203ENSMUST00000188024 404 ntTSL 3 BASIC19.12■□□□□ 0.65
Ddb1Q3U1J4 Gm43630-201ENSMUST00000201550 776 ntBASIC19.12■□□□□ 0.65
Ddb1Q3U1J4 Hdhd3-201ENSMUST00000037820 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Ddb1Q3U1J4 Ndufa8-201ENSMUST00000070112 861 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Ddb1Q3U1J4 Ccdc58-201ENSMUST00000099937 747 ntTSL 3 BASIC19.12■□□□□ 0.65
Ddb1Q3U1J4 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Ddb1Q3U1J4 Slc30a10-201ENSMUST00000061093 5836 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Ddb1Q3U1J4 P4ha2-202ENSMUST00000093107 2263 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Ddb1Q3U1J4 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Ddb1Q3U1J4 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Ddb1Q3U1J4 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC19.12■□□□□ 0.65
Ddb1Q3U1J4 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Ddb1Q3U1J4 1810014B01Rik-201ENSMUST00000181587 1661 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Ddb1Q3U1J4 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Ddb1Q3U1J4 Fntb-206ENSMUST00000137826 1442 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
Ddb1Q3U1J4 BC037032-204ENSMUST00000155191 3291 ntTSL 5 BASIC19.11■□□□□ 0.65
Ddb1Q3U1J4 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC19.11■□□□□ 0.65
Ddb1Q3U1J4 Mtif3-203ENSMUST00000110564 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Ddb1Q3U1J4 Mtif3-204ENSMUST00000110566 1134 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Ddb1Q3U1J4 Gm18624-201ENSMUST00000220966 658 ntBASIC19.11■□□□□ 0.65
Ddb1Q3U1J4 Rpp21-201ENSMUST00000025319 729 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Ddb1Q3U1J4 Olfr1412-201ENSMUST00000062964 966 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
Ddb1Q3U1J4 Odf3l2-201ENSMUST00000095464 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Ddb1Q3U1J4 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Ddb1Q3U1J4 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Ddb1Q3U1J4 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC19.11■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 27.6 ms