Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Nfkbie-201ENSMUST00000024742 2422 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col8a1Q00780 Ccdc160-201ENSMUST00000101588 1536 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col8a1Q00780 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC12.93□□□□□ -0.34
Col8a1Q00780 Nell1-201ENSMUST00000081872 6617 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col8a1Q00780 Plcxd1-201ENSMUST00000086687 1346 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col8a1Q00780 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col8a1Q00780 Ikbke-204ENSMUST00000161764 2867 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Col8a1Q00780 Mrpl57-201ENSMUST00000022538 2877 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col8a1Q00780 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Col8a1Q00780 Stra8-203ENSMUST00000114999 1455 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col8a1Q00780 Desi2-201ENSMUST00000027783 8802 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col8a1Q00780 Arap3-201ENSMUST00000042944 5224 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col8a1Q00780 Cd151-201ENSMUST00000058746 1619 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col8a1Q00780 Git2-204ENSMUST00000112185 5032 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Col8a1Q00780 Runx2-202ENSMUST00000113571 5898 ntAPPRIS P3 TSL 5 BASIC12.93□□□□□ -0.34
Col8a1Q00780 Gfpt1-202ENSMUST00000113655 1255 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Col8a1Q00780 Clnkos-201ENSMUST00000114080 439 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Col8a1Q00780 Rpl9-202ENSMUST00000118543 1193 ntTSL 2 BASIC12.93□□□□□ -0.34
Col8a1Q00780 Ndufa5-202ENSMUST00000118558 315 ntTSL 2 BASIC12.93□□□□□ -0.34
Col8a1Q00780 Gm13453-201ENSMUST00000118708 357 ntBASIC12.93□□□□□ -0.34
Col8a1Q00780 1700055C04Rik-201ENSMUST00000176450 355 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Col8a1Q00780 Gm43397-201ENSMUST00000196422 481 ntTSL 3 BASIC12.93□□□□□ -0.34
Col8a1Q00780 Tm2d3-207ENSMUST00000206517 905 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Col8a1Q00780 Tpi-rs5-201ENSMUST00000216947 774 ntBASIC12.93□□□□□ -0.34
Col8a1Q00780 Myl6b-201ENSMUST00000026428 1026 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col8a1Q00780 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Col8a1Q00780 Acat3-201ENSMUST00000043923 2123 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col8a1Q00780 Pcsk5-201ENSMUST00000025618 6675 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
Col8a1Q00780 Taf10-203ENSMUST00000141116 4281 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col8a1Q00780 Gm16845-201ENSMUST00000180419 1415 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Col8a1Q00780 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col8a1Q00780 Dpysl3-204ENSMUST00000121805 5484 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Col8a1Q00780 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Col8a1Q00780 Sp8-201ENSMUST00000063918 4478 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col8a1Q00780 Slc5a10-203ENSMUST00000148584 2049 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Col8a1Q00780 Coq6-203ENSMUST00000110278 1354 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Col8a1Q00780 Eif4g3-203ENSMUST00000084215 8134 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
Col8a1Q00780 Prr14-201ENSMUST00000033095 2402 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col8a1Q00780 Tmem229b-206ENSMUST00000174697 3697 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
Col8a1Q00780 Tacc1-202ENSMUST00000084512 6471 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col8a1Q00780 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col8a1Q00780 Gatad2a-203ENSMUST00000177851 5007 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
Col8a1Q00780 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Col8a1Q00780 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col8a1Q00780 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col8a1Q00780 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col8a1Q00780 Ccnyl1-202ENSMUST00000114077 3281 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Col8a1Q00780 Zswim4-201ENSMUST00000039480 4625 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col8a1Q00780 Ggt6-203ENSMUST00000108499 874 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Col8a1Q00780 Gm8410-201ENSMUST00000117225 605 ntBASIC12.92□□□□□ -0.34
Col8a1Q00780 Nr2f1-202ENSMUST00000125176 841 ntTSL 5 BASIC12.92□□□□□ -0.34
Col8a1Q00780 Mir7684-201ENSMUST00000183858 60 ntBASIC12.92□□□□□ -0.34
Col8a1Q00780 Fmc1-201ENSMUST00000019833 479 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col8a1Q00780 Gm42854-201ENSMUST00000201262 722 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Col8a1Q00780 Gm5184-201ENSMUST00000220417 1702 ntBASIC12.92□□□□□ -0.34
Col8a1Q00780 Anapc7-201ENSMUST00000031422 2751 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col8a1Q00780 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Col8a1Q00780 Tmem33-204ENSMUST00000161369 6164 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col8a1Q00780 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col8a1Q00780 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Col8a1Q00780 Rab23-201ENSMUST00000088287 4322 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col8a1Q00780 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC12.92□□□□□ -0.34
Col8a1Q00780 P2rx3-201ENSMUST00000028465 1812 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col8a1Q00780 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col8a1Q00780 Gif-201ENSMUST00000025585 1537 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col8a1Q00780 Kcnj14-201ENSMUST00000071937 2681 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col8a1Q00780 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC12.92□□□□□ -0.34
Col8a1Q00780 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col8a1Q00780 Aurka-202ENSMUST00000109139 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col8a1Q00780 Aurka-201ENSMUST00000028997 1905 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col8a1Q00780 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Col8a1Q00780 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col8a1Q00780 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
Col8a1Q00780 Atp6v0d1-201ENSMUST00000013304 1629 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col8a1Q00780 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC12.91□□□□□ -0.34
Col8a1Q00780 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col8a1Q00780 Gm42934-201ENSMUST00000196920 1345 ntBASIC12.91□□□□□ -0.34
Col8a1Q00780 Pcdha5-201ENSMUST00000192168 5206 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col8a1Q00780 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col8a1Q00780 Osr2-201ENSMUST00000022952 1724 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Col8a1Q00780 Lmcd1-201ENSMUST00000032376 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col8a1Q00780 Kmt5b-206ENSMUST00000113973 6130 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
Col8a1Q00780 Mlec-201ENSMUST00000112121 5955 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col8a1Q00780 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col8a1Q00780 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC12.91□□□□□ -0.34
Col8a1Q00780 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col8a1Q00780 Gabra5-202ENSMUST00000206382 2607 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
Col8a1Q00780 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Col8a1Q00780 Etfrf1-206ENSMUST00000111725 872 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
Col8a1Q00780 Olfr55-201ENSMUST00000112168 948 ntAPPRIS P1 BASIC12.91□□□□□ -0.34
Col8a1Q00780 Gm14928-201ENSMUST00000120198 477 ntBASIC12.91□□□□□ -0.34
Col8a1Q00780 Gm15693-201ENSMUST00000120470 637 ntBASIC12.91□□□□□ -0.34
Col8a1Q00780 Spata3-209ENSMUST00000152501 743 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Col8a1Q00780 Mtmr2-209ENSMUST00000156801 617 ntTSL 5 BASIC12.91□□□□□ -0.34
Col8a1Q00780 Pttg1ip-205ENSMUST00000162429 652 ntAPPRIS ALT2 TSL 2 BASIC12.91□□□□□ -0.34
Col8a1Q00780 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col8a1Q00780 AC166341.4-201ENSMUST00000220625 123 ntBASIC12.91□□□□□ -0.34
Col8a1Q00780 CT030684.1-201ENSMUST00000227292 914 ntBASIC12.91□□□□□ -0.34
Col8a1Q00780 Rps27l-201ENSMUST00000040917 499 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Col8a1Q00780 Gm5771-201ENSMUST00000049079 798 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 29 ms