Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Nyap1-204ENSMUST00000212152 2499 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Rfx1P48377 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
Rfx1P48377 Rgs3-204ENSMUST00000107420 2752 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Rfx1P48377 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Rfx1P48377 Rsbn1-202ENSMUST00000068879 6712 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Rfx1P48377 Crhbp-202ENSMUST00000221025 1779 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Rfx1P48377 Fam189b-203ENSMUST00000119707 2415 ntTSL 5 BASIC18.17■□□□□ 0.5
Rfx1P48377 Ppp1r3d-201ENSMUST00000058678 3267 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Rfx1P48377 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Rfx1P48377 Iqcm-201ENSMUST00000034033 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Rfx1P48377 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC18.16■□□□□ 0.5
Rfx1P48377 Nell1-201ENSMUST00000081872 6617 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Rfx1P48377 Wbscr25-202ENSMUST00000148729 2075 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Rfx1P48377 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Rfx1P48377 Gm8258-201ENSMUST00000055593 1449 ntBASIC18.16■□□□□ 0.5
Rfx1P48377 Wdr45b-201ENSMUST00000026173 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Rfx1P48377 Loxl1-201ENSMUST00000061799 3297 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Rfx1P48377 Amz2-202ENSMUST00000092500 2816 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Rfx1P48377 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Rfx1P48377 Nt5e-201ENSMUST00000034992 3995 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Rfx1P48377 Eomes-201ENSMUST00000035020 3560 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Rfx1P48377 Gm11950-201ENSMUST00000121615 838 ntBASIC18.16■□□□□ 0.5
Rfx1P48377 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Rfx1P48377 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC18.16■□□□□ 0.5
Rfx1P48377 AC153794.1-201ENSMUST00000169148 126 ntBASIC18.16■□□□□ 0.5
Rfx1P48377 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC18.16■□□□□ 0.5
Rfx1P48377 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Rfx1P48377 Taar2-201ENSMUST00000079134 1020 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Rfx1P48377 Krt25-201ENSMUST00000038004 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Rfx1P48377 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Rfx1P48377 2010007H06Rik-202ENSMUST00000186025 4934 ntTSL 2 BASIC18.16■□□□□ 0.5
Rfx1P48377 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC18.16■□□□□ 0.5
Rfx1P48377 Nxpe3-201ENSMUST00000099705 6430 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Rfx1P48377 Daxx-208ENSMUST00000174541 2325 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Rfx1P48377 Tbx15-201ENSMUST00000029462 3566 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Rfx1P48377 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Rfx1P48377 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Rfx1P48377 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Rfx1P48377 Cpne1-203ENSMUST00000109608 3492 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Rfx1P48377 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Rfx1P48377 Klhdc8b-207ENSMUST00000193286 2956 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Rfx1P48377 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Rfx1P48377 Tsc22d2-201ENSMUST00000099090 9799 ntAPPRIS P3 TSL 3 BASIC18.15■□□□□ 0.5
Rfx1P48377 Chuk-201ENSMUST00000026217 3502 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Rfx1P48377 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Rfx1P48377 Slc20a2-201ENSMUST00000067786 3566 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Rfx1P48377 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Rfx1P48377 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Rfx1P48377 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Rfx1P48377 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Rfx1P48377 Gm45760-201ENSMUST00000212190 1782 ntBASIC18.15■□□□□ 0.5
Rfx1P48377 Pias2-201ENSMUST00000114776 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Rfx1P48377 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Rfx1P48377 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Rfx1P48377 Gm12134-201ENSMUST00000122109 520 ntBASIC18.15■□□□□ 0.5
Rfx1P48377 Ffar2-203ENSMUST00000168528 1210 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Rfx1P48377 AC159093.1-201ENSMUST00000227779 380 ntBASIC18.15■□□□□ 0.5
Rfx1P48377 Trmt10c-201ENSMUST00000059052 3002 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Rfx1P48377 Lrwd1-201ENSMUST00000006301 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Rfx1P48377 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC18.15■□□□□ 0.5
Rfx1P48377 Zfp358-203ENSMUST00000208423 2200 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Rfx1P48377 Kif3a-201ENSMUST00000057330 2290 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Rfx1P48377 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC18.15■□□□□ 0.5
Rfx1P48377 Capn7-201ENSMUST00000022451 3648 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Rfx1P48377 Rhoj-202ENSMUST00000118602 2396 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Rfx1P48377 Glg1-204ENSMUST00000169020 7021 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Rfx1P48377 Nupl1-207ENSMUST00000225311 2475 ntBASIC18.14■□□□□ 0.5
Rfx1P48377 Cyp2f2-201ENSMUST00000003100 1866 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Rfx1P48377 Med15-201ENSMUST00000012259 3383 ntAPPRIS P4 TSL 1 (best) BASIC18.14■□□□□ 0.49
Rfx1P48377 Cacng2-201ENSMUST00000019290 5510 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Rfx1P48377 Gabra4-201ENSMUST00000031121 4108 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Rfx1P48377 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Rfx1P48377 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC18.14■□□□□ 0.49
Rfx1P48377 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Rfx1P48377 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Rfx1P48377 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC18.14■□□□□ 0.49
Rfx1P48377 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Rfx1P48377 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Rfx1P48377 Cdcp1-201ENSMUST00000039229 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Rfx1P48377 2810474O19Rik-202ENSMUST00000100765 5356 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Rfx1P48377 St8sia2-201ENSMUST00000026896 5368 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Rfx1P48377 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Rfx1P48377 Gm38392-202ENSMUST00000165196 1303 ntAPPRIS P5 TSL 5 BASIC18.14■□□□□ 0.49
Rfx1P48377 Efnb1-201ENSMUST00000052839 3258 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Rfx1P48377 Zfp839-201ENSMUST00000170060 3723 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Rfx1P48377 Midn-201ENSMUST00000042057 3727 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Rfx1P48377 Golim4-201ENSMUST00000038563 5546 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Rfx1P48377 Clstn1-202ENSMUST00000105691 4459 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Rfx1P48377 Cmtm1-202ENSMUST00000160596 1900 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Rfx1P48377 Sphk1-211ENSMUST00000141798 1532 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
Rfx1P48377 F2-201ENSMUST00000028681 1988 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Rfx1P48377 Dek-201ENSMUST00000021807 2556 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Rfx1P48377 Sesn1-201ENSMUST00000041438 2600 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Rfx1P48377 Gm38318-201ENSMUST00000195769 1706 ntBASIC18.13■□□□□ 0.49
Rfx1P48377 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Rfx1P48377 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC18.13■□□□□ 0.49
Rfx1P48377 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Rfx1P48377 Gm13312-201ENSMUST00000119631 718 ntBASIC18.13■□□□□ 0.49
Rfx1P48377 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC18.13■□□□□ 0.49
Rfx1P48377 Gm10252-201ENSMUST00000209541 832 ntBASIC18.13■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 38.7 ms