Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
Chmp6P0C0A3 Pacs2-201ENSMUST00000084891 5480 ntAPPRIS P2 TSL 5 BASIC16.54■□□□□ 0.24
Chmp6P0C0A3 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
Chmp6P0C0A3 Rnps1-203ENSMUST00000163717 1920 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
Chmp6P0C0A3 Gjb1-201ENSMUST00000052130 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Chmp6P0C0A3 Nmur1-203ENSMUST00000212541 1534 ntTSL 5 BASIC16.54■□□□□ 0.24
Chmp6P0C0A3 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Chmp6P0C0A3 Zfp212-201ENSMUST00000009411 2801 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Chmp6P0C0A3 Ldha-210ENSMUST00000209984 1815 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Chmp6P0C0A3 Zfp444-201ENSMUST00000054680 2467 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Chmp6P0C0A3 Tmem266-201ENSMUST00000034862 2408 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Chmp6P0C0A3 Kcnc1-201ENSMUST00000025202 7760 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Chmp6P0C0A3 Ndst2-202ENSMUST00000223679 3907 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
Chmp6P0C0A3 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Chmp6P0C0A3 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Chmp6P0C0A3 Scaf4-201ENSMUST00000039280 4165 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Chmp6P0C0A3 Rab3a-201ENSMUST00000034301 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Chmp6P0C0A3 Phf12-201ENSMUST00000049167 4410 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Chmp6P0C0A3 Nap1l4-209ENSMUST00000209098 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Chmp6P0C0A3 Dyrk3-201ENSMUST00000016670 3164 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Chmp6P0C0A3 Slc24a3-202ENSMUST00000110007 4048 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Chmp6P0C0A3 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC16.53■□□□□ 0.24
Chmp6P0C0A3 Hsph1-209ENSMUST00000202089 3054 ntTSL 5 BASIC16.53■□□□□ 0.24
Chmp6P0C0A3 Gadd45gip1-201ENSMUST00000036734 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Chmp6P0C0A3 AC163637.1-201ENSMUST00000215491 1894 ntBASIC16.53■□□□□ 0.24
Chmp6P0C0A3 Myh14-201ENSMUST00000048102 6457 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Chmp6P0C0A3 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Chmp6P0C0A3 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC16.53■□□□□ 0.24
Chmp6P0C0A3 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC16.53■□□□□ 0.24
Chmp6P0C0A3 Gm45144-201ENSMUST00000207473 354 ntTSL 5 BASIC16.53■□□□□ 0.24
Chmp6P0C0A3 AV026068-213ENSMUST00000223675 1171 ntBASIC16.53■□□□□ 0.24
Chmp6P0C0A3 Mrpl54-201ENSMUST00000046114 604 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Chmp6P0C0A3 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Chmp6P0C0A3 Siglece-201ENSMUST00000032667 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Chmp6P0C0A3 Piezo1-209ENSMUST00000156333 8219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Chmp6P0C0A3 Piezo1-201ENSMUST00000067252 8216 ntAPPRIS P2 TSL 5 BASIC16.53■□□□□ 0.24
Chmp6P0C0A3 Adgrb2-208ENSMUST00000121049 4871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Chmp6P0C0A3 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Chmp6P0C0A3 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Chmp6P0C0A3 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Chmp6P0C0A3 Prkcz2-201ENSMUST00000206136 1756 ntBASIC16.53■□□□□ 0.24
Chmp6P0C0A3 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Chmp6P0C0A3 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Chmp6P0C0A3 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Chmp6P0C0A3 Tnfrsf13c-202ENSMUST00000109535 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Chmp6P0C0A3 Mrc2-202ENSMUST00000100335 5795 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Chmp6P0C0A3 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Chmp6P0C0A3 Hbegf-201ENSMUST00000025363 2373 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Chmp6P0C0A3 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
Chmp6P0C0A3 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Chmp6P0C0A3 Gm27528-202ENSMUST00000222916 2012 ntBASIC16.52■□□□□ 0.24
Chmp6P0C0A3 Sema5b-202ENSMUST00000120756 4646 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Chmp6P0C0A3 Stard7-201ENSMUST00000110374 1530 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Chmp6P0C0A3 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Chmp6P0C0A3 4933434E20Rik-203ENSMUST00000068798 1500 ntTSL 5 BASIC16.52■□□□□ 0.24
Chmp6P0C0A3 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC16.52■□□□□ 0.24
Chmp6P0C0A3 Myo9b-201ENSMUST00000071935 7082 ntAPPRIS P3 TSL 5 BASIC16.52■□□□□ 0.24
Chmp6P0C0A3 Gm11536-201ENSMUST00000130733 535 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Chmp6P0C0A3 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Chmp6P0C0A3 Cyhr1-204ENSMUST00000177359 1110 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Chmp6P0C0A3 BC022687-202ENSMUST00000177808 1207 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Chmp6P0C0A3 1810008I18Rik-202ENSMUST00000187848 819 ntTSL 3 BASIC16.52■□□□□ 0.24
Chmp6P0C0A3 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC16.52■□□□□ 0.24
Chmp6P0C0A3 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Chmp6P0C0A3 Idnk-201ENSMUST00000051490 764 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Chmp6P0C0A3 6030408B16Rik-201ENSMUST00000071328 1155 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
Chmp6P0C0A3 Egr1-201ENSMUST00000064795 4484 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Chmp6P0C0A3 Pld2-202ENSMUST00000108556 3391 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
Chmp6P0C0A3 Syne3-201ENSMUST00000067005 5097 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Chmp6P0C0A3 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC16.51■□□□□ 0.23
Chmp6P0C0A3 Gm13337-201ENSMUST00000119183 1594 ntBASIC16.51■□□□□ 0.23
Chmp6P0C0A3 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Chmp6P0C0A3 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Chmp6P0C0A3 Sez6-202ENSMUST00000093995 4239 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
Chmp6P0C0A3 Gpr135-201ENSMUST00000050649 3150 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Chmp6P0C0A3 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC16.51■□□□□ 0.23
Chmp6P0C0A3 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Chmp6P0C0A3 Slc5a5-201ENSMUST00000000809 2928 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Chmp6P0C0A3 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Chmp6P0C0A3 Dhx34-203ENSMUST00000119102 4310 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
Chmp6P0C0A3 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Chmp6P0C0A3 Prodh2-201ENSMUST00000058280 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Chmp6P0C0A3 4933433G15Rik-201ENSMUST00000180533 1481 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Chmp6P0C0A3 Gm11185-201ENSMUST00000117732 1007 ntBASIC16.51■□□□□ 0.23
Chmp6P0C0A3 1700039E22Rik-201ENSMUST00000174082 770 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Chmp6P0C0A3 Mir5126-201ENSMUST00000175513 77 ntBASIC16.51■□□□□ 0.23
Chmp6P0C0A3 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC16.51■□□□□ 0.23
Chmp6P0C0A3 A830052D11Rik-201ENSMUST00000181729 1130 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Chmp6P0C0A3 1810026B05Rik-205ENSMUST00000184855 409 ntTSL 3 BASIC16.51■□□□□ 0.23
Chmp6P0C0A3 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC16.51■□□□□ 0.23
Chmp6P0C0A3 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC16.51■□□□□ 0.23
Chmp6P0C0A3 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Chmp6P0C0A3 Ahdc1-202ENSMUST00000105914 5898 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Chmp6P0C0A3 Dnm2-211ENSMUST00000173397 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Chmp6P0C0A3 A230072C01Rik-202ENSMUST00000136447 1412 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Chmp6P0C0A3 Sybu-207ENSMUST00000227305 3124 ntAPPRIS ALT2 BASIC16.51■□□□□ 0.23
Chmp6P0C0A3 Agbl5-202ENSMUST00000114700 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Chmp6P0C0A3 Tmem81-202ENSMUST00000188789 1751 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Chmp6P0C0A3 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Chmp6P0C0A3 Tmem94-201ENSMUST00000093912 5329 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 36.9 ms