Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Ptprs-202ENSMUST00000086828 5608 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Hoxd3P09027 Ankrd13a-201ENSMUST00000102578 3717 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Hoxd3P09027 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
Hoxd3P09027 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC11.83□□□□□ -0.52
Hoxd3P09027 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Hoxd3P09027 Faf1-201ENSMUST00000102724 4468 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Hoxd3P09027 Fhl1-201ENSMUST00000023854 2356 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Hoxd3P09027 Mef2b-203ENSMUST00000110143 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Hoxd3P09027 Abat-202ENSMUST00000115838 1348 ntTSL 2 BASIC11.83□□□□□ -0.52
Hoxd3P09027 Arfip1-203ENSMUST00000143514 1343 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Hoxd3P09027 Mtg2-201ENSMUST00000087563 1346 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Hoxd3P09027 Alpl-201ENSMUST00000030551 2522 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Hoxd3P09027 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
Hoxd3P09027 Clgn-202ENSMUST00000109831 2293 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Hoxd3P09027 Gm42473-201ENSMUST00000201056 2291 ntBASIC11.83□□□□□ -0.52
Hoxd3P09027 AC093043.3-201ENSMUST00000226531 2273 ntBASIC11.83□□□□□ -0.52
Hoxd3P09027 AC157650.3-201ENSMUST00000225058 1476 ntBASIC11.83□□□□□ -0.52
Hoxd3P09027 Lrrc32-203ENSMUST00000205956 4576 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Hoxd3P09027 Tdg-201ENSMUST00000092266 2959 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Hoxd3P09027 Brd3-203ENSMUST00000113941 5289 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Hoxd3P09027 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Hoxd3P09027 Cfap69-205ENSMUST00000135252 2188 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Hoxd3P09027 Epor-201ENSMUST00000006397 1761 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Hoxd3P09027 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Hoxd3P09027 Gm9867-201ENSMUST00000192212 2647 ntBASIC11.82□□□□□ -0.52
Hoxd3P09027 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Hoxd3P09027 Aimp2-202ENSMUST00000100483 1073 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Hoxd3P09027 Dhdds-203ENSMUST00000105886 1015 ntTSL 5 BASIC11.82□□□□□ -0.52
Hoxd3P09027 Prmt7-203ENSMUST00000109297 1094 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Hoxd3P09027 Chchd6-202ENSMUST00000113550 1042 ntTSL 5 BASIC11.82□□□□□ -0.52
Hoxd3P09027 Sfxn5-203ENSMUST00000113787 638 ntTSL 2 BASIC11.82□□□□□ -0.52
Hoxd3P09027 Faap20-210ENSMUST00000178473 1076 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Hoxd3P09027 Ndufaf8-202ENSMUST00000185558 427 ntTSL 5 BASIC11.82□□□□□ -0.52
Hoxd3P09027 Tma7-203ENSMUST00000192801 386 ntTSL 3 BASIC11.82□□□□□ -0.52
Hoxd3P09027 Gm44123-201ENSMUST00000204662 577 ntTSL 5 BASIC11.82□□□□□ -0.52
Hoxd3P09027 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Hoxd3P09027 Gm19324-201ENSMUST00000213229 1169 ntBASIC11.82□□□□□ -0.52
Hoxd3P09027 AC154248.2-201ENSMUST00000221964 659 ntTSL 5 BASIC11.82□□□□□ -0.52
Hoxd3P09027 Aimp2-201ENSMUST00000031613 1185 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Hoxd3P09027 Chchd6-201ENSMUST00000032172 1121 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Hoxd3P09027 Gm10175-201ENSMUST00000086013 645 ntBASIC11.82□□□□□ -0.52
Hoxd3P09027 Mrgpra4-201ENSMUST00000087092 1259 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Hoxd3P09027 C920006O11Rik-201ENSMUST00000180974 1444 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Hoxd3P09027 Rubcn-201ENSMUST00000040986 5257 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Hoxd3P09027 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Hoxd3P09027 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Hoxd3P09027 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Hoxd3P09027 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC11.82□□□□□ -0.52
Hoxd3P09027 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC11.82□□□□□ -0.52
Hoxd3P09027 Zswim4-201ENSMUST00000039480 4625 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Hoxd3P09027 Apc-202ENSMUST00000079362 8867 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Hoxd3P09027 Fam102a-201ENSMUST00000048375 4223 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Hoxd3P09027 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Hoxd3P09027 Cspg5-204ENSMUST00000197850 7868 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Hoxd3P09027 1700029J07Rik-202ENSMUST00000098786 1340 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Hoxd3P09027 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Hoxd3P09027 AC133083.1-201ENSMUST00000221736 2209 ntBASIC11.82□□□□□ -0.52
Hoxd3P09027 Otp-201ENSMUST00000022195 2656 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Hoxd3P09027 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Hoxd3P09027 Dnajc1-202ENSMUST00000091418 5070 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Hoxd3P09027 Cyp46a1-201ENSMUST00000021684 2118 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Hoxd3P09027 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Hoxd3P09027 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC11.81□□□□□ -0.52
Hoxd3P09027 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Hoxd3P09027 Mccc1-201ENSMUST00000029259 2455 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Hoxd3P09027 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
Hoxd3P09027 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
Hoxd3P09027 Frmd5-207ENSMUST00000138157 4230 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Hoxd3P09027 Gm16011-201ENSMUST00000121567 2662 ntBASIC11.81□□□□□ -0.52
Hoxd3P09027 Irf3-202ENSMUST00000107834 1429 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Hoxd3P09027 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Hoxd3P09027 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
Hoxd3P09027 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC11.81□□□□□ -0.52
Hoxd3P09027 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Hoxd3P09027 Dlk1-203ENSMUST00000109842 1129 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Hoxd3P09027 Gm14822-201ENSMUST00000122247 291 ntBASIC11.81□□□□□ -0.52
Hoxd3P09027 Rbmx-206ENSMUST00000143310 1296 ntTSL 5 BASIC11.81□□□□□ -0.52
Hoxd3P09027 4930556N13Rik-201ENSMUST00000173677 1034 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Hoxd3P09027 1500015A07Rik-203ENSMUST00000184678 890 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Hoxd3P09027 Gm36972-201ENSMUST00000194000 676 ntTSL 3 BASIC11.81□□□□□ -0.52
Hoxd3P09027 1700030N18Rik-201ENSMUST00000202497 966 ntBASIC11.81□□□□□ -0.52
Hoxd3P09027 Gm44945-201ENSMUST00000206764 1187 ntBASIC11.81□□□□□ -0.52
Hoxd3P09027 Ndufaf2-202ENSMUST00000223734 556 ntBASIC11.81□□□□□ -0.52
Hoxd3P09027 Cox7a2l-201ENSMUST00000025095 1078 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Hoxd3P09027 Cidea-201ENSMUST00000025404 1164 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Hoxd3P09027 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Hoxd3P09027 Rnf150-201ENSMUST00000078525 9682 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Hoxd3P09027 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Hoxd3P09027 Chpf-202ENSMUST00000094818 3065 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Hoxd3P09027 Gm19430-201ENSMUST00000193847 2137 ntBASIC11.81□□□□□ -0.52
Hoxd3P09027 9530085L11Rik-201ENSMUST00000203963 2115 ntBASIC11.81□□□□□ -0.52
Hoxd3P09027 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Hoxd3P09027 Rsbn1l-201ENSMUST00000036489 5550 ntAPPRIS P2 TSL 5 BASIC11.81□□□□□ -0.52
Hoxd3P09027 Axin1-201ENSMUST00000074370 3777 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
Hoxd3P09027 Mael-202ENSMUST00000194057 1691 ntTSL 5 BASIC11.81□□□□□ -0.52
Hoxd3P09027 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Hoxd3P09027 Gm45212-201ENSMUST00000205831 3403 ntBASIC11.8□□□□□ -0.52
Hoxd3P09027 Tbx3-202ENSMUST00000079719 4982 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Hoxd3P09027 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Hoxd3P09027 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC11.8□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 48.6 ms