Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col3a1P08121 Mfng-201ENSMUST00000018313 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col3a1P08121 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col3a1P08121 Rad18-202ENSMUST00000077088 2577 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col3a1P08121 Abraxas1-202ENSMUST00000055245 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col3a1P08121 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col3a1P08121 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col3a1P08121 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col3a1P08121 Wdr45b-201ENSMUST00000026173 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col3a1P08121 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC17.95■□□□□ 0.46
Col3a1P08121 Trnt1-203ENSMUST00000113248 1398 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col3a1P08121 Fhad1-201ENSMUST00000036701 1366 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Col3a1P08121 Ubl4b-201ENSMUST00000052853 1387 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
Col3a1P08121 Wac-201ENSMUST00000074919 3070 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Col3a1P08121 Txnrd3-202ENSMUST00000101171 2494 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Col3a1P08121 Cbfb-203ENSMUST00000109394 2487 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Col3a1P08121 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col3a1P08121 Gm14206-201ENSMUST00000132973 747 ntTSL 3 BASIC17.95■□□□□ 0.46
Col3a1P08121 Gm27533-201ENSMUST00000183800 152 ntBASIC17.95■□□□□ 0.46
Col3a1P08121 Gm6566-201ENSMUST00000221468 1171 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Col3a1P08121 Car10-205ENSMUST00000107861 2613 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Col3a1P08121 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Col3a1P08121 Cyp4f18-201ENSMUST00000003574 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Col3a1P08121 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Col3a1P08121 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Col3a1P08121 Tcf21-202ENSMUST00000218002 1788 ntBASIC17.94■□□□□ 0.46
Col3a1P08121 Zfyve19-202ENSMUST00000102519 1505 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Col3a1P08121 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Col3a1P08121 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC17.94■□□□□ 0.46
Col3a1P08121 Mmab-202ENSMUST00000112245 644 ntTSL 3 BASIC17.94■□□□□ 0.46
Col3a1P08121 Zfp637-202ENSMUST00000112859 421 ntTSL 2 BASIC17.94■□□□□ 0.46
Col3a1P08121 Gm30437-201ENSMUST00000206086 1201 ntBASIC17.94■□□□□ 0.46
Col3a1P08121 4930408O17Rik-202ENSMUST00000222624 1131 ntTSL 5 BASIC17.94■□□□□ 0.46
Col3a1P08121 AC140375.2-201ENSMUST00000225283 584 ntBASIC17.94■□□□□ 0.46
Col3a1P08121 Slc2a6-202ENSMUST00000102890 1887 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Col3a1P08121 Oas1a-201ENSMUST00000080322 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col3a1P08121 Sh3bp2-203ENSMUST00000118545 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col3a1P08121 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
Col3a1P08121 Rhpn1-201ENSMUST00000023244 1932 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col3a1P08121 Tulp3-201ENSMUST00000001562 3374 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col3a1P08121 Slc35c1-202ENSMUST00000125276 2668 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Col3a1P08121 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Col3a1P08121 Ywhaq-201ENSMUST00000049531 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col3a1P08121 Gnb1-201ENSMUST00000030940 3131 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col3a1P08121 Mindy1-212ENSMUST00000168223 1812 ntTSL 5 BASIC17.93■□□□□ 0.46
Col3a1P08121 Sec24a-202ENSMUST00000064297 2104 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Col3a1P08121 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col3a1P08121 Msmp-201ENSMUST00000107884 743 ntAPPRIS P1 TSL 3 BASIC17.93■□□□□ 0.46
Col3a1P08121 Fis1-203ENSMUST00000111097 601 ntTSL 2 BASIC17.93■□□□□ 0.46
Col3a1P08121 Gm8749-201ENSMUST00000117737 331 ntBASIC17.93■□□□□ 0.46
Col3a1P08121 Rpl9-202ENSMUST00000118543 1193 ntTSL 2 BASIC17.93■□□□□ 0.46
Col3a1P08121 Fis1-201ENSMUST00000019198 786 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col3a1P08121 Prok2-204ENSMUST00000203738 695 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Col3a1P08121 Cmtm5-201ENSMUST00000037814 1095 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col3a1P08121 Rpl10-ps2-201ENSMUST00000098432 645 ntBASIC17.93■□□□□ 0.46
Col3a1P08121 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col3a1P08121 Cndp2-202ENSMUST00000168419 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col3a1P08121 Rhcg-201ENSMUST00000032766 2090 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col3a1P08121 Krt42-201ENSMUST00000017270 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col3a1P08121 Zscan12-202ENSMUST00000099720 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col3a1P08121 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Col3a1P08121 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col3a1P08121 Espnl-202ENSMUST00000176156 2886 ntTSL 5 BASIC17.92■□□□□ 0.46
Col3a1P08121 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col3a1P08121 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col3a1P08121 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col3a1P08121 Gm26681-201ENSMUST00000180851 1440 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Col3a1P08121 Gcsh-201ENSMUST00000040484 1443 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col3a1P08121 Rhox2d-201ENSMUST00000115179 685 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
Col3a1P08121 Gm12151-201ENSMUST00000121374 290 ntBASIC17.92■□□□□ 0.46
Col3a1P08121 Gm13383-201ENSMUST00000131190 1171 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Col3a1P08121 Haghl-203ENSMUST00000133071 1128 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Col3a1P08121 Wfdc2-201ENSMUST00000017867 849 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col3a1P08121 CT025535.1-201ENSMUST00000227172 491 ntBASIC17.92■□□□□ 0.46
Col3a1P08121 Ucn-201ENSMUST00000043475 504 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col3a1P08121 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col3a1P08121 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC17.92■□□□□ 0.46
Col3a1P08121 Add1-204ENSMUST00000114338 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col3a1P08121 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Col3a1P08121 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC17.92■□□□□ 0.46
Col3a1P08121 Itpripl1-201ENSMUST00000110386 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col3a1P08121 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col3a1P08121 Kcnj8-201ENSMUST00000032374 2269 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Col3a1P08121 Mtmr7-202ENSMUST00000048898 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col3a1P08121 Esco1-203ENSMUST00000115864 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col3a1P08121 Npffr1-201ENSMUST00000020287 3479 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
Col3a1P08121 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Col3a1P08121 Actg1-204ENSMUST00000106215 1827 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col3a1P08121 Zbtb46-205ENSMUST00000180222 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col3a1P08121 Kir3dl1-201ENSMUST00000113104 1031 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Col3a1P08121 Gm9719-201ENSMUST00000162765 543 ntBASIC17.91■□□□□ 0.46
Col3a1P08121 Mir7684-201ENSMUST00000183858 60 ntBASIC17.91■□□□□ 0.46
Col3a1P08121 Cartpt-201ENSMUST00000022150 827 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Col3a1P08121 Gm6888-201ENSMUST00000221983 706 ntBASIC17.91■□□□□ 0.46
Col3a1P08121 Cartpt-202ENSMUST00000224142 1238 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
Col3a1P08121 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col3a1P08121 Ifnl2-201ENSMUST00000081684 702 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col3a1P08121 Sergef-201ENSMUST00000033127 1465 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col3a1P08121 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col3a1P08121 1600014C10Rik-208ENSMUST00000179525 2326 ntTSL 2 BASIC17.91■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 28.6 ms