Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Gm7222-201ENSMUST00000117512 906 ntBASIC16.74■□□□□ 0.27
Prpf40aQ9R1C7 Gm12953-201ENSMUST00000138426 751 ntTSL 2 BASIC16.74■□□□□ 0.27
Prpf40aQ9R1C7 H2-T-ps-201ENSMUST00000172538 1067 ntBASIC16.74■□□□□ 0.27
Prpf40aQ9R1C7 H2-Bl-201ENSMUST00000173080 1138 ntAPPRIS P5 TSL 1 (best) BASIC16.74■□□□□ 0.27
Prpf40aQ9R1C7 Gm26549-201ENSMUST00000181112 1209 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Prpf40aQ9R1C7 H2-Bl-204ENSMUST00000184502 862 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Prpf40aQ9R1C7 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Prpf40aQ9R1C7 Gm10060-201ENSMUST00000212002 111 ntBASIC16.74■□□□□ 0.27
Prpf40aQ9R1C7 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Prpf40aQ9R1C7 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Prpf40aQ9R1C7 Psmb4-201ENSMUST00000005923 1183 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Prpf40aQ9R1C7 Hs3st3b1-201ENSMUST00000094103 4911 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Prpf40aQ9R1C7 6430573F11Rik-205ENSMUST00000171777 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Prpf40aQ9R1C7 Clstn1-202ENSMUST00000105691 4459 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Prpf40aQ9R1C7 E430018J23Rik-201ENSMUST00000074249 2063 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Prpf40aQ9R1C7 Cry1-201ENSMUST00000020227 3026 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Prpf40aQ9R1C7 Acss3-201ENSMUST00000044668 2494 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Prpf40aQ9R1C7 Usp31-201ENSMUST00000046929 10198 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
Prpf40aQ9R1C7 Itpripl1-201ENSMUST00000110386 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Prpf40aQ9R1C7 Lrrc25-201ENSMUST00000052437 1313 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Prpf40aQ9R1C7 Cpxm1-201ENSMUST00000028897 2366 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Prpf40aQ9R1C7 Gm13337-201ENSMUST00000119183 1594 ntBASIC16.73■□□□□ 0.27
Prpf40aQ9R1C7 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Prpf40aQ9R1C7 Klhl26-204ENSMUST00000209567 2615 ntTSL 3 BASIC16.73■□□□□ 0.27
Prpf40aQ9R1C7 Ica1l-201ENSMUST00000027172 3650 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Prpf40aQ9R1C7 Susd6-201ENSMUST00000068519 4977 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Prpf40aQ9R1C7 Cgn-203ENSMUST00000153263 2210 ntTSL 2 BASIC16.73■□□□□ 0.27
Prpf40aQ9R1C7 Trmt1-201ENSMUST00000001974 2567 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
Prpf40aQ9R1C7 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Prpf40aQ9R1C7 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
Prpf40aQ9R1C7 Rbmx-206ENSMUST00000143310 1296 ntTSL 5 BASIC16.73■□□□□ 0.27
Prpf40aQ9R1C7 Ubl5-204ENSMUST00000160682 489 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
Prpf40aQ9R1C7 Gm26664-201ENSMUST00000181140 705 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Prpf40aQ9R1C7 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
Prpf40aQ9R1C7 AC110091.2-202ENSMUST00000216718 1148 ntTSL 5 BASIC16.73■□□□□ 0.27
Prpf40aQ9R1C7 Mtus2-201ENSMUST00000071878 1211 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Prpf40aQ9R1C7 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Prpf40aQ9R1C7 Zfp612-202ENSMUST00000212754 4863 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Prpf40aQ9R1C7 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Prpf40aQ9R1C7 Akt2-202ENSMUST00000085917 1392 ntTSL 5 BASIC16.73■□□□□ 0.27
Prpf40aQ9R1C7 Rlf-201ENSMUST00000056635 6242 ntAPPRIS P2 TSL 5 BASIC16.73■□□□□ 0.27
Prpf40aQ9R1C7 Sec24a-203ENSMUST00000109092 2094 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Prpf40aQ9R1C7 Dlat-201ENSMUST00000034567 4035 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Prpf40aQ9R1C7 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Prpf40aQ9R1C7 Apol8-201ENSMUST00000070911 1838 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Prpf40aQ9R1C7 1700066M21Rik-201ENSMUST00000042734 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Prpf40aQ9R1C7 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Prpf40aQ9R1C7 Gldn-201ENSMUST00000056740 4658 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Prpf40aQ9R1C7 Por-202ENSMUST00000122113 2606 ntTSL 2 BASIC16.72■□□□□ 0.27
Prpf40aQ9R1C7 Hs3st3a1-201ENSMUST00000058652 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Prpf40aQ9R1C7 Gm26666-201ENSMUST00000180763 2461 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Prpf40aQ9R1C7 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Prpf40aQ9R1C7 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Prpf40aQ9R1C7 St8sia2-201ENSMUST00000026896 5368 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Prpf40aQ9R1C7 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Prpf40aQ9R1C7 Fbxo41-201ENSMUST00000159062 6505 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Prpf40aQ9R1C7 Ccdc68-201ENSMUST00000043929 1618 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Prpf40aQ9R1C7 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC16.72■□□□□ 0.27
Prpf40aQ9R1C7 Frs3os-201ENSMUST00000136531 978 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Prpf40aQ9R1C7 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Prpf40aQ9R1C7 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
Prpf40aQ9R1C7 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC16.72■□□□□ 0.27
Prpf40aQ9R1C7 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC16.72■□□□□ 0.27
Prpf40aQ9R1C7 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Prpf40aQ9R1C7 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC16.72■□□□□ 0.27
Prpf40aQ9R1C7 Hist1h2ak-201ENSMUST00000074752 393 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
Prpf40aQ9R1C7 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC16.72■□□□□ 0.27
Prpf40aQ9R1C7 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
Prpf40aQ9R1C7 Scamp1-201ENSMUST00000022197 4259 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Prpf40aQ9R1C7 Serpinf1-201ENSMUST00000000769 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Prpf40aQ9R1C7 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC16.72■□□□□ 0.27
Prpf40aQ9R1C7 Phf12-201ENSMUST00000049167 4410 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Prpf40aQ9R1C7 Tmem2-201ENSMUST00000025663 6585 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Prpf40aQ9R1C7 Rimkla-201ENSMUST00000049994 4097 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Prpf40aQ9R1C7 Gjb6-201ENSMUST00000039380 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Prpf40aQ9R1C7 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Prpf40aQ9R1C7 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
Prpf40aQ9R1C7 Syne3-201ENSMUST00000067005 5097 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Prpf40aQ9R1C7 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Prpf40aQ9R1C7 Cgn-202ENSMUST00000107273 5016 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
Prpf40aQ9R1C7 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Prpf40aQ9R1C7 Psmd5-201ENSMUST00000028225 4397 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Prpf40aQ9R1C7 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Prpf40aQ9R1C7 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC16.71■□□□□ 0.27
Prpf40aQ9R1C7 Ndufa5-202ENSMUST00000118558 315 ntTSL 2 BASIC16.71■□□□□ 0.27
Prpf40aQ9R1C7 Slbp-205ENSMUST00000139518 1191 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
Prpf40aQ9R1C7 Rhox13-201ENSMUST00000152730 876 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Prpf40aQ9R1C7 Fbxo17-205ENSMUST00000167118 861 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
Prpf40aQ9R1C7 Gm7286-201ENSMUST00000182691 1007 ntBASIC16.71■□□□□ 0.27
Prpf40aQ9R1C7 AC159106.1-201ENSMUST00000224421 690 ntBASIC16.71■□□□□ 0.27
Prpf40aQ9R1C7 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Prpf40aQ9R1C7 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Prpf40aQ9R1C7 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC16.71■□□□□ 0.27
Prpf40aQ9R1C7 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
Prpf40aQ9R1C7 Ntng2-203ENSMUST00000091153 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Prpf40aQ9R1C7 Gm14026-201ENSMUST00000120625 1789 ntBASIC16.71■□□□□ 0.27
Prpf40aQ9R1C7 Pik3c2b-201ENSMUST00000077730 7928 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.26
Prpf40aQ9R1C7 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
Prpf40aQ9R1C7 Sike1-201ENSMUST00000029447 7375 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
Prpf40aQ9R1C7 Cstf2-203ENSMUST00000113287 3661 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 26.6 ms