Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC20.47■□□□□ 0.87
Scn4aQ9ER60 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Scn4aQ9ER60 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Scn4aQ9ER60 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Scn4aQ9ER60 Shf-202ENSMUST00000110530 910 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
Scn4aQ9ER60 Creb3-206ENSMUST00000167751 1212 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
Scn4aQ9ER60 Gm20652-201ENSMUST00000177314 383 ntTSL 2 BASIC20.46■□□□□ 0.87
Scn4aQ9ER60 Gm26721-201ENSMUST00000181723 992 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Scn4aQ9ER60 AC164573.1-201ENSMUST00000218616 963 ntTSL 5 BASIC20.46■□□□□ 0.87
Scn4aQ9ER60 AC093022.1-201ENSMUST00000226949 1072 ntBASIC20.46■□□□□ 0.87
Scn4aQ9ER60 Dnajc17-201ENSMUST00000038439 1008 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Scn4aQ9ER60 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Scn4aQ9ER60 Plin5-201ENSMUST00000019808 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Scn4aQ9ER60 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
Scn4aQ9ER60 Chtf8-202ENSMUST00000175940 2890 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Scn4aQ9ER60 AC115863.1-201ENSMUST00000214815 1813 ntBASIC20.46■□□□□ 0.87
Scn4aQ9ER60 Cd300lf-203ENSMUST00000106562 1762 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Scn4aQ9ER60 Tcf21-202ENSMUST00000218002 1788 ntBASIC20.46■□□□□ 0.87
Scn4aQ9ER60 Cdc23-201ENSMUST00000025228 2084 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Scn4aQ9ER60 Krt18-201ENSMUST00000023803 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Scn4aQ9ER60 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Scn4aQ9ER60 Gm42939-201ENSMUST00000197514 2205 ntBASIC20.46■□□□□ 0.87
Scn4aQ9ER60 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Scn4aQ9ER60 Txn2-202ENSMUST00000100486 676 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Scn4aQ9ER60 Styxl1-205ENSMUST00000111164 1243 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Scn4aQ9ER60 Isg20-202ENSMUST00000118867 697 ntAPPRIS P1 TSL 3 BASIC20.46■□□□□ 0.87
Scn4aQ9ER60 Ccnh-202ENSMUST00000163600 1055 ntTSL 5 BASIC20.46■□□□□ 0.87
Scn4aQ9ER60 Gm38266-201ENSMUST00000194931 421 ntBASIC20.46■□□□□ 0.87
Scn4aQ9ER60 4933424G06Rik-204ENSMUST00000208994 1120 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Scn4aQ9ER60 4930447A16Rik-201ENSMUST00000022897 587 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Scn4aQ9ER60 Cox7a2-201ENSMUST00000034881 659 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Scn4aQ9ER60 Sgce-207ENSMUST00000126151 1522 ntTSL 5 BASIC20.46■□□□□ 0.87
Scn4aQ9ER60 BC001981-202ENSMUST00000191393 1545 ntBASIC20.46■□□□□ 0.87
Scn4aQ9ER60 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Scn4aQ9ER60 Eif3i-201ENSMUST00000102593 1123 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Scn4aQ9ER60 Psme2b-201ENSMUST00000104958 837 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
Scn4aQ9ER60 Gm15460-201ENSMUST00000118147 391 ntBASIC20.45■□□□□ 0.86
Scn4aQ9ER60 Efcab10-201ENSMUST00000020878 673 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Scn4aQ9ER60 Cnpy2-201ENSMUST00000026446 763 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
Scn4aQ9ER60 Haus7-202ENSMUST00000077243 1032 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Scn4aQ9ER60 Gm3695-201ENSMUST00000087222 1009 ntBASIC20.45■□□□□ 0.86
Scn4aQ9ER60 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Scn4aQ9ER60 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Scn4aQ9ER60 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC20.45■□□□□ 0.86
Scn4aQ9ER60 Ewsr1-201ENSMUST00000063232 1320 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Scn4aQ9ER60 4933409G03Rik-201ENSMUST00000102713 1263 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Scn4aQ9ER60 Mrpl2-203ENSMUST00000113430 991 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
Scn4aQ9ER60 Gm11803-201ENSMUST00000119966 444 ntBASIC20.44■□□□□ 0.86
Scn4aQ9ER60 Zfp125-202ENSMUST00000144811 704 ntTSL 5 BASIC20.44■□□□□ 0.86
Scn4aQ9ER60 Ablim2-213ENSMUST00000150146 415 ntTSL 2 BASIC20.44■□□□□ 0.86
Scn4aQ9ER60 Usp46os2-201ENSMUST00000152787 831 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Scn4aQ9ER60 1700021A07Rik-203ENSMUST00000188024 404 ntTSL 3 BASIC20.44■□□□□ 0.86
Scn4aQ9ER60 Ssr2-202ENSMUST00000192495 620 ntTSL 5 BASIC20.44■□□□□ 0.86
Scn4aQ9ER60 Gm37312-201ENSMUST00000195753 685 ntTSL 5 BASIC20.44■□□□□ 0.86
Scn4aQ9ER60 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC20.44■□□□□ 0.86
Scn4aQ9ER60 Jakmip3-201ENSMUST00000106111 1571 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
Scn4aQ9ER60 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Scn4aQ9ER60 Golt1a-201ENSMUST00000094557 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Scn4aQ9ER60 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Scn4aQ9ER60 Pou2f3-202ENSMUST00000176636 2522 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Scn4aQ9ER60 Gm2694-202ENSMUST00000180806 1452 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Scn4aQ9ER60 Pex11g-202ENSMUST00000111081 666 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Scn4aQ9ER60 Gm45692-201ENSMUST00000131138 557 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
Scn4aQ9ER60 Gm15429-201ENSMUST00000151268 798 ntBASIC20.43■□□□□ 0.86
Scn4aQ9ER60 1600014C10Rik-203ENSMUST00000177983 403 ntTSL 2 BASIC20.43■□□□□ 0.86
Scn4aQ9ER60 Gm27847-201ENSMUST00000183711 107 ntBASIC20.43■□□□□ 0.86
Scn4aQ9ER60 Gm27375-201ENSMUST00000183799 107 ntBASIC20.43■□□□□ 0.86
Scn4aQ9ER60 Gm38341-201ENSMUST00000195357 515 ntBASIC20.43■□□□□ 0.86
Scn4aQ9ER60 Tmem179-202ENSMUST00000222836 521 ntTSL 5 BASIC20.43■□□□□ 0.86
Scn4aQ9ER60 Tex26-201ENSMUST00000031667 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Scn4aQ9ER60 Wdr70-201ENSMUST00000045766 2126 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Scn4aQ9ER60 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Scn4aQ9ER60 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Scn4aQ9ER60 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Scn4aQ9ER60 Olah-201ENSMUST00000027955 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Scn4aQ9ER60 Chit1-201ENSMUST00000086475 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Scn4aQ9ER60 Gm29374-201ENSMUST00000187198 1340 ntTSL 3 BASIC20.43■□□□□ 0.86
Scn4aQ9ER60 Ccnc-203ENSMUST00000108240 1406 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Scn4aQ9ER60 Cabp4-201ENSMUST00000025761 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Scn4aQ9ER60 Wfdc3-201ENSMUST00000103096 911 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Scn4aQ9ER60 Pla2g2e-203ENSMUST00000105804 786 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Scn4aQ9ER60 Gm13464-201ENSMUST00000119418 935 ntBASIC20.43■□□□□ 0.86
Scn4aQ9ER60 Gm11261-203ENSMUST00000132470 838 ntTSL 5 BASIC20.43■□□□□ 0.86
Scn4aQ9ER60 Gm12714-201ENSMUST00000143391 669 ntTSL 3 BASIC20.43■□□□□ 0.86
Scn4aQ9ER60 Gm829-202ENSMUST00000146622 722 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Scn4aQ9ER60 1600014C23Rik-201ENSMUST00000178179 518 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Scn4aQ9ER60 Pla2g2e-201ENSMUST00000030531 854 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Scn4aQ9ER60 Selenow-201ENSMUST00000044355 736 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Scn4aQ9ER60 Lim2-201ENSMUST00000004732 884 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Scn4aQ9ER60 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Scn4aQ9ER60 Gm15557-201ENSMUST00000109629 1380 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
Scn4aQ9ER60 Gm16401-202ENSMUST00000197463 2074 ntBASIC20.43■□□□□ 0.86
Scn4aQ9ER60 Sostdc1-201ENSMUST00000041407 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Scn4aQ9ER60 Epor-201ENSMUST00000006397 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Scn4aQ9ER60 Orc6-202ENSMUST00000170141 1466 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Scn4aQ9ER60 Phyh-201ENSMUST00000027975 1438 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Scn4aQ9ER60 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Scn4aQ9ER60 Gstt2-203ENSMUST00000218500 794 ntTSL 5 BASIC20.42■□□□□ 0.86
Scn4aQ9ER60 Gm8598-201ENSMUST00000221184 836 ntBASIC20.42■□□□□ 0.86
Scn4aQ9ER60 Oxt-201ENSMUST00000028764 537 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 49.1 ms