Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Kdm3a-201ENSMUST00000065509 4816 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Msh4Q99MT2 Gm37500-201ENSMUST00000192059 1443 ntBASIC14.83□□□□□ -0.03
Msh4Q99MT2 Tdrd7-201ENSMUST00000102929 3716 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.03
Msh4Q99MT2 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC14.83□□□□□ -0.03
Msh4Q99MT2 Eif2b1-201ENSMUST00000031334 2013 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Msh4Q99MT2 Arap3-201ENSMUST00000042944 5224 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Msh4Q99MT2 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Msh4Q99MT2 Kcnc1-201ENSMUST00000025202 7760 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
Msh4Q99MT2 Gdpd2-202ENSMUST00000113744 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Msh4Q99MT2 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Msh4Q99MT2 Pcdh20-201ENSMUST00000061628 5241 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Msh4Q99MT2 Tfap2c-201ENSMUST00000030391 2838 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Msh4Q99MT2 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Msh4Q99MT2 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
Msh4Q99MT2 Timm23-201ENSMUST00000013845 1173 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Msh4Q99MT2 Pantr2-201ENSMUST00000180589 463 ntTSL 3 BASIC14.83□□□□□ -0.04
Msh4Q99MT2 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Msh4Q99MT2 Timm13-204ENSMUST00000219896 542 ntTSL 3 BASIC14.83□□□□□ -0.04
Msh4Q99MT2 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
Msh4Q99MT2 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Msh4Q99MT2 Trmt1-201ENSMUST00000001974 2567 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
Msh4Q99MT2 Sik1-201ENSMUST00000024839 4511 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Msh4Q99MT2 Zfp612-202ENSMUST00000212754 4863 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Msh4Q99MT2 AL691505.1-201ENSMUST00000219965 1618 ntTSL 5 BASIC14.83□□□□□ -0.04
Msh4Q99MT2 Ankrd16-201ENSMUST00000056108 1618 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
Msh4Q99MT2 Gm38392-202ENSMUST00000165196 1303 ntAPPRIS P5 TSL 5 BASIC14.83□□□□□ -0.04
Msh4Q99MT2 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Msh4Q99MT2 Map2k3-201ENSMUST00000019076 2198 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Msh4Q99MT2 Fam69c-201ENSMUST00000052501 2153 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Msh4Q99MT2 Usp31-201ENSMUST00000046929 10198 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
Msh4Q99MT2 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Msh4Q99MT2 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Msh4Q99MT2 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Msh4Q99MT2 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC14.82□□□□□ -0.04
Msh4Q99MT2 Runx2-202ENSMUST00000113571 5898 ntAPPRIS P3 TSL 5 BASIC14.82□□□□□ -0.04
Msh4Q99MT2 Gm15510-201ENSMUST00000123644 1172 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Msh4Q99MT2 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Msh4Q99MT2 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC14.82□□□□□ -0.04
Msh4Q99MT2 Olfr572-203ENSMUST00000215782 1233 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
Msh4Q99MT2 AC110091.2-202ENSMUST00000216718 1148 ntTSL 5 BASIC14.82□□□□□ -0.04
Msh4Q99MT2 Csrp2-207ENSMUST00000220409 780 ntTSL 2 BASIC14.82□□□□□ -0.04
Msh4Q99MT2 Rhebl1-201ENSMUST00000024518 1185 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Msh4Q99MT2 Izumo1r-201ENSMUST00000034409 1291 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Msh4Q99MT2 Sept8-207ENSMUST00000147912 1742 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Msh4Q99MT2 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC14.82□□□□□ -0.04
Msh4Q99MT2 Zfp316-201ENSMUST00000051665 3054 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Msh4Q99MT2 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Msh4Q99MT2 Adam23-204ENSMUST00000114103 2655 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Msh4Q99MT2 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Msh4Q99MT2 6430573F11Rik-205ENSMUST00000171777 1825 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Msh4Q99MT2 Gm3045-201ENSMUST00000212844 1825 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
Msh4Q99MT2 Dtd1-201ENSMUST00000028917 1350 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Msh4Q99MT2 Nrip2-201ENSMUST00000001561 1893 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Msh4Q99MT2 Lonrf3-201ENSMUST00000016383 2911 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Msh4Q99MT2 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Msh4Q99MT2 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Msh4Q99MT2 Clstn1-202ENSMUST00000105691 4459 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Msh4Q99MT2 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Msh4Q99MT2 Sec24a-203ENSMUST00000109092 2094 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Msh4Q99MT2 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Msh4Q99MT2 Gpd1l-204ENSMUST00000146623 4391 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Msh4Q99MT2 Ambra1-205ENSMUST00000111317 4929 ntTSL 5 BASIC14.81□□□□□ -0.04
Msh4Q99MT2 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
Msh4Q99MT2 Mettl27-202ENSMUST00000068617 1685 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Msh4Q99MT2 Gtpbp3-201ENSMUST00000007754 2800 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Msh4Q99MT2 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC14.81□□□□□ -0.04
Msh4Q99MT2 Adamts20-201ENSMUST00000035342 6027 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Msh4Q99MT2 Nap1l5-201ENSMUST00000059539 1844 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
Msh4Q99MT2 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Msh4Q99MT2 Itpripl1-201ENSMUST00000110386 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Msh4Q99MT2 Ecm1-201ENSMUST00000029753 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Msh4Q99MT2 Gpr3-202ENSMUST00000105911 2518 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
Msh4Q99MT2 Gm12350-201ENSMUST00000121208 462 ntBASIC14.81□□□□□ -0.04
Msh4Q99MT2 Mir5126-201ENSMUST00000175513 77 ntBASIC14.81□□□□□ -0.04
Msh4Q99MT2 Gm6550-201ENSMUST00000187574 993 ntBASIC14.81□□□□□ -0.04
Msh4Q99MT2 2810030D12Rik-203ENSMUST00000190461 1039 ntBASIC14.81□□□□□ -0.04
Msh4Q99MT2 Gm6443-201ENSMUST00000203599 874 ntBASIC14.81□□□□□ -0.04
Msh4Q99MT2 D530033B14Rik-201ENSMUST00000205412 546 ntTSL 5 BASIC14.81□□□□□ -0.04
Msh4Q99MT2 Zfp524-202ENSMUST00000207901 1263 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
Msh4Q99MT2 Dars-202ENSMUST00000064309 645 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Msh4Q99MT2 Gm3928-201ENSMUST00000121141 1307 ntBASIC14.81□□□□□ -0.04
Msh4Q99MT2 4833422C13Rik-201ENSMUST00000099331 2083 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Msh4Q99MT2 Spag16-201ENSMUST00000065425 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Msh4Q99MT2 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Msh4Q99MT2 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Msh4Q99MT2 Vps51-204ENSMUST00000159832 3048 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
Msh4Q99MT2 Pdhb-201ENSMUST00000022268 1513 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Msh4Q99MT2 1600014C10Rik-208ENSMUST00000179525 2326 ntTSL 2 BASIC14.81□□□□□ -0.04
Msh4Q99MT2 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
Msh4Q99MT2 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Msh4Q99MT2 Slc4a5-202ENSMUST00000113899 5039 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
Msh4Q99MT2 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Msh4Q99MT2 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Msh4Q99MT2 Apoa4-201ENSMUST00000034585 1815 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Msh4Q99MT2 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC14.8□□□□□ -0.04
Msh4Q99MT2 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Msh4Q99MT2 Cacnb1-201ENSMUST00000017552 3396 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Msh4Q99MT2 Adgrl1-210ENSMUST00000152978 5734 ntTSL 5 BASIC14.8□□□□□ -0.04
Msh4Q99MT2 Galnt18-202ENSMUST00000106663 2530 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Msh4Q99MT2 Arl4a-201ENSMUST00000101472 1200 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 256.1 ms