Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Gm43767-201ENSMUST00000198933 381 ntBASIC20.79■□□□□ 0.92
Usp40Q8BWR4 AC126408.1-201ENSMUST00000225184 523 ntBASIC20.79■□□□□ 0.92
Usp40Q8BWR4 Prss29-201ENSMUST00000024993 1178 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Usp40Q8BWR4 Rasgef1c-202ENSMUST00000093141 2120 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Usp40Q8BWR4 Cdk2-201ENSMUST00000026415 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Usp40Q8BWR4 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Usp40Q8BWR4 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Usp40Q8BWR4 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Usp40Q8BWR4 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Usp40Q8BWR4 Nfe2l2-201ENSMUST00000102672 2475 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Usp40Q8BWR4 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usp40Q8BWR4 Slc25a19-201ENSMUST00000021089 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usp40Q8BWR4 Agbl5-202ENSMUST00000114700 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usp40Q8BWR4 Snx14-206ENSMUST00000173039 2970 ntTSL 5 BASIC20.78■□□□□ 0.92
Usp40Q8BWR4 Nrg1-218ENSMUST00000209107 2972 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
Usp40Q8BWR4 Taf15-201ENSMUST00000021018 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usp40Q8BWR4 Gm14026-201ENSMUST00000120625 1789 ntBASIC20.78■□□□□ 0.92
Usp40Q8BWR4 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usp40Q8BWR4 Rcn3-208ENSMUST00000211352 1453 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usp40Q8BWR4 Gm20661-203ENSMUST00000177368 900 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
Usp40Q8BWR4 Prss47-201ENSMUST00000182457 828 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
Usp40Q8BWR4 Gm27920-201ENSMUST00000183953 96 ntBASIC20.78■□□□□ 0.92
Usp40Q8BWR4 Gm38225-201ENSMUST00000194001 393 ntBASIC20.78■□□□□ 0.92
Usp40Q8BWR4 Gm10747-201ENSMUST00000217799 1014 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Usp40Q8BWR4 Caly-201ENSMUST00000026541 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usp40Q8BWR4 Gm5771-201ENSMUST00000049079 798 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usp40Q8BWR4 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
Usp40Q8BWR4 Snap91-204ENSMUST00000098495 4150 ntAPPRIS P4 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usp40Q8BWR4 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usp40Q8BWR4 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usp40Q8BWR4 Id2-202ENSMUST00000221761 1969 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
Usp40Q8BWR4 Lbp-201ENSMUST00000016168 2525 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Usp40Q8BWR4 Pola2-201ENSMUST00000025752 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Usp40Q8BWR4 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Usp40Q8BWR4 Gm36445-203ENSMUST00000209951 1597 ntTSL 5 BASIC20.77■□□□□ 0.92
Usp40Q8BWR4 Insig1-201ENSMUST00000059155 2697 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Usp40Q8BWR4 Gata1-201ENSMUST00000033502 1902 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Usp40Q8BWR4 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Usp40Q8BWR4 Brwd3-202ENSMUST00000101283 1066 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Usp40Q8BWR4 Sept1-201ENSMUST00000106313 1285 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
Usp40Q8BWR4 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
Usp40Q8BWR4 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC20.77■□□□□ 0.92
Usp40Q8BWR4 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC20.77■□□□□ 0.92
Usp40Q8BWR4 Bricd5-202ENSMUST00000164508 701 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Usp40Q8BWR4 Khdc3-202ENSMUST00000167514 1251 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
Usp40Q8BWR4 Gm27622-201ENSMUST00000183779 60 ntBASIC20.77■□□□□ 0.92
Usp40Q8BWR4 Cd3g-201ENSMUST00000002101 1023 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Usp40Q8BWR4 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Usp40Q8BWR4 2810408A11Rik-202ENSMUST00000100969 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.91
Usp40Q8BWR4 Nf2-201ENSMUST00000053079 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Usp40Q8BWR4 Gm42934-201ENSMUST00000196920 1345 ntBASIC20.77■□□□□ 0.91
Usp40Q8BWR4 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Usp40Q8BWR4 Adipor1-201ENSMUST00000027727 3123 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Usp40Q8BWR4 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
Usp40Q8BWR4 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Usp40Q8BWR4 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC20.76■□□□□ 0.91
Usp40Q8BWR4 Tmem97-201ENSMUST00000103242 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Usp40Q8BWR4 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
Usp40Q8BWR4 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC20.76■□□□□ 0.91
Usp40Q8BWR4 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Usp40Q8BWR4 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Usp40Q8BWR4 Esr1-202ENSMUST00000105588 2733 ntTSL 5 BASIC20.76■□□□□ 0.91
Usp40Q8BWR4 Gm13015-201ENSMUST00000118674 204 ntBASIC20.76■□□□□ 0.91
Usp40Q8BWR4 2810408I11Rik-202ENSMUST00000150749 711 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Usp40Q8BWR4 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Usp40Q8BWR4 Gm20444-201ENSMUST00000174014 648 ntTSL 3 BASIC20.76■□□□□ 0.91
Usp40Q8BWR4 Gm27618-201ENSMUST00000183671 60 ntBASIC20.76■□□□□ 0.91
Usp40Q8BWR4 4930573H18Rik-201ENSMUST00000197696 906 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Usp40Q8BWR4 Gm42854-201ENSMUST00000201262 722 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Usp40Q8BWR4 Klk2-ps-201ENSMUST00000205342 571 ntBASIC20.76■□□□□ 0.91
Usp40Q8BWR4 Lce1g-201ENSMUST00000029527 925 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Usp40Q8BWR4 Gpbar1-201ENSMUST00000077985 1075 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
Usp40Q8BWR4 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC20.76■□□□□ 0.91
Usp40Q8BWR4 Comt-202ENSMUST00000115609 1786 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Usp40Q8BWR4 Plbd2-201ENSMUST00000031597 4208 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Usp40Q8BWR4 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Usp40Q8BWR4 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Usp40Q8BWR4 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
Usp40Q8BWR4 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Usp40Q8BWR4 Esrrb-206ENSMUST00000167891 1344 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Usp40Q8BWR4 Rfc3-201ENSMUST00000038131 1317 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Usp40Q8BWR4 Fbxl7-201ENSMUST00000059204 4632 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Usp40Q8BWR4 Hif3a-201ENSMUST00000037762 2206 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
Usp40Q8BWR4 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Usp40Q8BWR4 Sphk1-201ENSMUST00000063396 2659 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
Usp40Q8BWR4 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Usp40Q8BWR4 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Usp40Q8BWR4 Gm17399-201ENSMUST00000181824 1181 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Usp40Q8BWR4 Gm29541-201ENSMUST00000191351 678 ntBASIC20.75■□□□□ 0.91
Usp40Q8BWR4 Commd9-201ENSMUST00000028584 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Usp40Q8BWR4 Crhr2-209ENSMUST00000213026 1443 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Usp40Q8BWR4 Ephx3-202ENSMUST00000162117 1590 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Usp40Q8BWR4 Kat8-201ENSMUST00000033070 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Usp40Q8BWR4 Nap1l4-209ENSMUST00000209098 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Usp40Q8BWR4 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC20.75■□□□□ 0.91
Usp40Q8BWR4 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC20.74■□□□□ 0.91
Usp40Q8BWR4 Gm26889-201ENSMUST00000181523 2252 ntTSL 5 BASIC20.74■□□□□ 0.91
Usp40Q8BWR4 Chtf8-202ENSMUST00000175940 2890 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Usp40Q8BWR4 Hsd3b7-202ENSMUST00000106271 1713 ntTSL 5 BASIC20.74■□□□□ 0.91
Usp40Q8BWR4 Gm6415-201ENSMUST00000118488 348 ntBASIC20.74■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 26.8 ms