Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 Gm13112-201ENSMUST00000138795 1258 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Col27a1Q5QNQ9 Sox2ot-208ENSMUST00000197103 802 ntTSL 2 BASIC14.45□□□□□ -0.1
Col27a1Q5QNQ9 Gm45841-201ENSMUST00000207700 164 ntBASIC14.45□□□□□ -0.1
Col27a1Q5QNQ9 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col27a1Q5QNQ9 Eaf2-201ENSMUST00000023537 849 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
Col27a1Q5QNQ9 Rrp36-201ENSMUST00000024766 1195 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col27a1Q5QNQ9 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col27a1Q5QNQ9 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col27a1Q5QNQ9 Rcn3-201ENSMUST00000019683 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col27a1Q5QNQ9 Ttll3-206ENSMUST00000204026 1472 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Col27a1Q5QNQ9 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col27a1Q5QNQ9 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col27a1Q5QNQ9 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col27a1Q5QNQ9 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC14.44□□□□□ -0.1
Col27a1Q5QNQ9 Tmem254b-202ENSMUST00000100806 1108 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Col27a1Q5QNQ9 Tmem254a-201ENSMUST00000100811 1108 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Col27a1Q5QNQ9 Snhg20-201ENSMUST00000145438 459 ntTSL 3 BASIC14.44□□□□□ -0.1
Col27a1Q5QNQ9 Ppm1h-208ENSMUST00000162969 811 ntTSL 3 BASIC14.44□□□□□ -0.1
Col27a1Q5QNQ9 Ndufaf2-201ENSMUST00000163558 678 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col27a1Q5QNQ9 Zfp414-204ENSMUST00000166627 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col27a1Q5QNQ9 Gm6916-202ENSMUST00000205523 195 ntBASIC14.44□□□□□ -0.1
Col27a1Q5QNQ9 4930518P08Rik-201ENSMUST00000221281 1187 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Col27a1Q5QNQ9 AC144543.1-201ENSMUST00000221840 1064 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Col27a1Q5QNQ9 AC154171.1-201ENSMUST00000224610 643 ntBASIC14.44□□□□□ -0.1
Col27a1Q5QNQ9 CT485787.1-201ENSMUST00000225617 968 ntBASIC14.44□□□□□ -0.1
Col27a1Q5QNQ9 Dpm3-201ENSMUST00000040824 404 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col27a1Q5QNQ9 Kcnk9-201ENSMUST00000044624 1209 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col27a1Q5QNQ9 4921530L21Rik-201ENSMUST00000045892 1161 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col27a1Q5QNQ9 Zfp414-201ENSMUST00000073570 1197 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col27a1Q5QNQ9 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col27a1Q5QNQ9 Trip10-202ENSMUST00000224152 1812 ntAPPRIS ALT2 BASIC14.44□□□□□ -0.1
Col27a1Q5QNQ9 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC14.44□□□□□ -0.1
Col27a1Q5QNQ9 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col27a1Q5QNQ9 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Col27a1Q5QNQ9 Wac-201ENSMUST00000074919 3070 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Col27a1Q5QNQ9 Pfkfb4-203ENSMUST00000198140 3488 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col27a1Q5QNQ9 Fzr1-202ENSMUST00000118812 1215 ntTSL 5 BASIC14.43□□□□□ -0.1
Col27a1Q5QNQ9 Med28-203ENSMUST00000119579 636 ntTSL 3 BASIC14.43□□□□□ -0.1
Col27a1Q5QNQ9 Trav4d-2-201ENSMUST00000120914 335 ntBASIC14.43□□□□□ -0.1
Col27a1Q5QNQ9 Srgn-201ENSMUST00000020271 938 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col27a1Q5QNQ9 Gm11661-201ENSMUST00000121761 1327 ntBASIC14.43□□□□□ -0.1
Col27a1Q5QNQ9 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col27a1Q5QNQ9 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Col27a1Q5QNQ9 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col27a1Q5QNQ9 Urm1-201ENSMUST00000091142 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col27a1Q5QNQ9 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col27a1Q5QNQ9 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Col27a1Q5QNQ9 Fbxo5-201ENSMUST00000019907 1940 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col27a1Q5QNQ9 Gm45751-201ENSMUST00000210185 1573 ntBASIC14.43□□□□□ -0.1
Col27a1Q5QNQ9 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC14.43□□□□□ -0.1
Col27a1Q5QNQ9 Arl6-202ENSMUST00000099646 1554 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Col27a1Q5QNQ9 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col27a1Q5QNQ9 Ninj1-202ENSMUST00000120733 1321 ntTSL 5 BASIC14.43□□□□□ -0.1
Col27a1Q5QNQ9 1700069L16Rik-203ENSMUST00000162388 706 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col27a1Q5QNQ9 Gm9728-201ENSMUST00000200197 1055 ntBASIC14.43□□□□□ -0.1
Col27a1Q5QNQ9 AC159896.2-201ENSMUST00000214753 269 ntBASIC14.43□□□□□ -0.1
Col27a1Q5QNQ9 AC154319.1-201ENSMUST00000216330 312 ntBASIC14.43□□□□□ -0.1
Col27a1Q5QNQ9 AL589735.1-201ENSMUST00000224353 270 ntBASIC14.43□□□□□ -0.1
Col27a1Q5QNQ9 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
Col27a1Q5QNQ9 Celf4-206ENSMUST00000224553 1729 ntBASIC14.42□□□□□ -0.1
Col27a1Q5QNQ9 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col27a1Q5QNQ9 Nfe2l2-201ENSMUST00000102672 2475 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col27a1Q5QNQ9 S100b-201ENSMUST00000036387 1484 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col27a1Q5QNQ9 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col27a1Q5QNQ9 Mrpl44-201ENSMUST00000027464 1424 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col27a1Q5QNQ9 Kcnj8-201ENSMUST00000032374 2269 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Col27a1Q5QNQ9 Rps8-201ENSMUST00000102696 860 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col27a1Q5QNQ9 Gm37230-201ENSMUST00000194491 818 ntBASIC14.42□□□□□ -0.1
Col27a1Q5QNQ9 Atp6v0c-201ENSMUST00000024932 1183 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col27a1Q5QNQ9 Gm8225-201ENSMUST00000090257 879 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col27a1Q5QNQ9 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col27a1Q5QNQ9 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Col27a1Q5QNQ9 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
Col27a1Q5QNQ9 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col27a1Q5QNQ9 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col27a1Q5QNQ9 Neu4-202ENSMUST00000190212 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col27a1Q5QNQ9 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC14.42□□□□□ -0.1
Col27a1Q5QNQ9 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Col27a1Q5QNQ9 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col27a1Q5QNQ9 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col27a1Q5QNQ9 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col27a1Q5QNQ9 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Col27a1Q5QNQ9 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col27a1Q5QNQ9 Tubb3-201ENSMUST00000071134 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col27a1Q5QNQ9 Metap1d-201ENSMUST00000037210 1321 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col27a1Q5QNQ9 Pnpo-202ENSMUST00000107629 681 ntTSL 3 BASIC14.41□□□□□ -0.1
Col27a1Q5QNQ9 Stra8-202ENSMUST00000114997 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col27a1Q5QNQ9 C430014B12Rik-201ENSMUST00000181720 1001 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Col27a1Q5QNQ9 Ppcdc-205ENSMUST00000214144 724 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Col27a1Q5QNQ9 AC154846.1-201ENSMUST00000226278 862 ntBASIC14.41□□□□□ -0.1
Col27a1Q5QNQ9 Mal-201ENSMUST00000028853 486 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Col27a1Q5QNQ9 Rnf113a1-201ENSMUST00000046433 1223 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
Col27a1Q5QNQ9 Olfr569-201ENSMUST00000078191 945 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
Col27a1Q5QNQ9 Olfr582-201ENSMUST00000098212 960 ntBASIC14.41□□□□□ -0.1
Col27a1Q5QNQ9 Ptcd2-201ENSMUST00000022153 1704 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col27a1Q5QNQ9 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col27a1Q5QNQ9 As3mt-201ENSMUST00000003655 1751 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col27a1Q5QNQ9 Piezo2-201ENSMUST00000046860 2849 ntTSL 5 BASIC14.41□□□□□ -0.1
Col27a1Q5QNQ9 Nptn-201ENSMUST00000085651 2024 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Col27a1Q5QNQ9 Arf5-202ENSMUST00000169841 768 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 24.2 ms