Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Irgc1-201ENSMUST00000080594 1737 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Shmt1P50431 Pald1-201ENSMUST00000020289 4282 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Shmt1P50431 Aimp2-202ENSMUST00000100483 1073 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Shmt1P50431 Tmsb4x-202ENSMUST00000112175 864 ntTSL 2 BASIC16.06■□□□□ 0.16
Shmt1P50431 Rabepk-202ENSMUST00000113086 1106 ntTSL 5 BASIC16.06■□□□□ 0.16
Shmt1P50431 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Shmt1P50431 Gm12008-201ENSMUST00000117791 755 ntBASIC16.06■□□□□ 0.16
Shmt1P50431 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
Shmt1P50431 Gm27244-201ENSMUST00000184260 380 ntTSL 5 BASIC16.06■□□□□ 0.16
Shmt1P50431 Stard3nl-209ENSMUST00000221380 1268 ntTSL 5 BASIC16.06■□□□□ 0.16
Shmt1P50431 Aimp2-201ENSMUST00000031613 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Shmt1P50431 Olfr541-201ENSMUST00000080681 1103 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
Shmt1P50431 Gm16279-201ENSMUST00000149452 2945 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Shmt1P50431 Adam15-202ENSMUST00000074582 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Shmt1P50431 Cpxm1-201ENSMUST00000028897 2366 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Shmt1P50431 Rwdd2b-201ENSMUST00000039101 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Shmt1P50431 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Shmt1P50431 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Shmt1P50431 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Shmt1P50431 Zfp740-202ENSMUST00000119168 3932 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Shmt1P50431 4921539H07Rik-202ENSMUST00000200072 1665 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Shmt1P50431 Slc22a18-202ENSMUST00000105917 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Shmt1P50431 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Shmt1P50431 Dlk2-203ENSMUST00000166617 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Shmt1P50431 Stox2-208ENSMUST00000211737 4573 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Shmt1P50431 Hoxd12-201ENSMUST00000001878 2534 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Shmt1P50431 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC16.05■□□□□ 0.16
Shmt1P50431 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Shmt1P50431 P3h1-204ENSMUST00000121111 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Shmt1P50431 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Shmt1P50431 Klk6-202ENSMUST00000107967 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Shmt1P50431 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Shmt1P50431 Slc7a10-203ENSMUST00000135452 629 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Shmt1P50431 Mymx-202ENSMUST00000169137 616 ntAPPRIS P4 TSL 2 BASIC16.05■□□□□ 0.16
Shmt1P50431 Ighv1-15-201ENSMUST00000192077 351 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
Shmt1P50431 Tpd52l1-202ENSMUST00000213528 969 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Shmt1P50431 Pard6a-202ENSMUST00000098444 1273 ntTSL 2 BASIC16.05■□□□□ 0.16
Shmt1P50431 Vav1-204ENSMUST00000169220 2810 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Shmt1P50431 Cnot11-203ENSMUST00000161515 3482 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Shmt1P50431 Kank1-201ENSMUST00000049400 5637 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
Shmt1P50431 Oas1b-203ENSMUST00000183291 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Shmt1P50431 Lrp6-201ENSMUST00000032322 9368 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Shmt1P50431 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Shmt1P50431 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Shmt1P50431 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC16.05■□□□□ 0.16
Shmt1P50431 Taf10-203ENSMUST00000141116 4281 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Shmt1P50431 Ppef2-201ENSMUST00000031359 2274 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Shmt1P50431 Tango6-202ENSMUST00000211979 2722 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Shmt1P50431 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Shmt1P50431 Iqck-202ENSMUST00000106547 2026 ntAPPRIS P2 TSL 5 BASIC16.04■□□□□ 0.16
Shmt1P50431 A430035B10Rik-204ENSMUST00000148063 2010 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Shmt1P50431 Lypd1-201ENSMUST00000027582 1447 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Shmt1P50431 Celf1-201ENSMUST00000005643 4830 ntAPPRIS P4 TSL 5 BASIC16.04■□□□□ 0.16
Shmt1P50431 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Shmt1P50431 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Shmt1P50431 Ilkap-201ENSMUST00000027534 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Shmt1P50431 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Shmt1P50431 Pola2-201ENSMUST00000025752 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Shmt1P50431 Edn3-203ENSMUST00000140908 731 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
Shmt1P50431 Gm36972-201ENSMUST00000194000 676 ntTSL 3 BASIC16.04■□□□□ 0.16
Shmt1P50431 Gm45231-201ENSMUST00000208629 1064 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Shmt1P50431 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
Shmt1P50431 D930028M14Rik-201ENSMUST00000098678 1003 ntTSL 2 BASIC16.04■□□□□ 0.16
Shmt1P50431 Mief1-202ENSMUST00000166030 2712 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Shmt1P50431 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Shmt1P50431 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
Shmt1P50431 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
Shmt1P50431 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Shmt1P50431 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Shmt1P50431 Nkain2-203ENSMUST00000191234 3760 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Shmt1P50431 Rnase10-202ENSMUST00000164632 1521 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Shmt1P50431 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
Shmt1P50431 Skor1-203ENSMUST00000119146 3610 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Shmt1P50431 Tom1l2-205ENSMUST00000102682 2256 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Shmt1P50431 Nanos1-201ENSMUST00000088237 3927 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
Shmt1P50431 Cbln3-202ENSMUST00000172378 1438 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Shmt1P50431 Gm8242-201ENSMUST00000193029 1420 ntBASIC16.03■□□□□ 0.16
Shmt1P50431 Znfx1-201ENSMUST00000048988 7218 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Shmt1P50431 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
Shmt1P50431 Pde3b-201ENSMUST00000032909 6573 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Shmt1P50431 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
Shmt1P50431 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Shmt1P50431 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC16.03■□□□□ 0.16
Shmt1P50431 Gdap1l1-203ENSMUST00000109421 1206 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Shmt1P50431 Rhox7b-201ENSMUST00000115156 1091 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Shmt1P50431 Gm16198-201ENSMUST00000118766 670 ntBASIC16.03■□□□□ 0.16
Shmt1P50431 Gm16151-201ENSMUST00000129696 639 ntTSL 3 BASIC16.03■□□□□ 0.16
Shmt1P50431 Grip1os3-202ENSMUST00000146294 957 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Shmt1P50431 Tex30-213ENSMUST00000156392 1122 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
Shmt1P50431 Ndufa1-201ENSMUST00000016571 419 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Shmt1P50431 Rpl26-206ENSMUST00000167436 606 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Shmt1P50431 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Shmt1P50431 Hddc3-206ENSMUST00000206074 565 ntTSL 2 BASIC16.03■□□□□ 0.16
Shmt1P50431 Thap2-203ENSMUST00000218989 527 ntBASIC16.03■□□□□ 0.16
Shmt1P50431 Ndufaf2-202ENSMUST00000223734 556 ntBASIC16.03■□□□□ 0.16
Shmt1P50431 Msrb2-201ENSMUST00000023856 1196 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Shmt1P50431 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Shmt1P50431 Rhox7a-201ENSMUST00000096454 983 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Shmt1P50431 Parp16-205ENSMUST00000216702 1643 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Shmt1P50431 Naa50-203ENSMUST00000159514 3756 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 34.2 ms