Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Gemin7-204ENSMUST00000122055 609 ntAPPRIS P1 TSL 3 BASIC11.85□□□□□ -0.51
Hoxd3P09027 Dpf3-205ENSMUST00000177801 1092 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Hoxd3P09027 Gm38134-201ENSMUST00000191858 1234 ntTSL 5 BASIC11.85□□□□□ -0.51
Hoxd3P09027 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
Hoxd3P09027 AC155714.1-201ENSMUST00000214033 956 ntTSL 5 BASIC11.85□□□□□ -0.51
Hoxd3P09027 Gm7229-201ENSMUST00000214719 1007 ntBASIC11.85□□□□□ -0.51
Hoxd3P09027 AC160980.1-201ENSMUST00000224136 970 ntBASIC11.85□□□□□ -0.51
Hoxd3P09027 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC11.85□□□□□ -0.51
Hoxd3P09027 Cog8-201ENSMUST00000034391 2954 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Hoxd3P09027 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC11.85□□□□□ -0.51
Hoxd3P09027 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Hoxd3P09027 Hykk-201ENSMUST00000039742 5110 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Hoxd3P09027 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
Hoxd3P09027 Slc33a1-203ENSMUST00000161659 2554 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Hoxd3P09027 Fgf15-201ENSMUST00000033389 1810 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Hoxd3P09027 Gm38318-201ENSMUST00000195769 1706 ntBASIC11.85□□□□□ -0.51
Hoxd3P09027 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Hoxd3P09027 Insr-201ENSMUST00000091291 9355 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Hoxd3P09027 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC11.85□□□□□ -0.51
Hoxd3P09027 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Hoxd3P09027 Ppp2r2a-204ENSMUST00000225380 1988 ntBASIC11.85□□□□□ -0.51
Hoxd3P09027 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Hoxd3P09027 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Hoxd3P09027 AC153526.5-201ENSMUST00000218661 2147 ntBASIC11.84□□□□□ -0.51
Hoxd3P09027 E330009J07Rik-202ENSMUST00000101492 6742 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Hoxd3P09027 Pak2-201ENSMUST00000023467 5741 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Hoxd3P09027 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Hoxd3P09027 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Hoxd3P09027 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Hoxd3P09027 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Hoxd3P09027 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Hoxd3P09027 Hs3st2-201ENSMUST00000084628 2278 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Hoxd3P09027 D430041D05Rik-201ENSMUST00000089726 10124 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Hoxd3P09027 Trip6-201ENSMUST00000024119 2168 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Hoxd3P09027 Smarca5-201ENSMUST00000043359 6113 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Hoxd3P09027 Cyb5rl-204ENSMUST00000106760 840 ntTSL 3 BASIC11.84□□□□□ -0.51
Hoxd3P09027 Qdpr-204ENSMUST00000120867 1234 ntTSL 5 BASIC11.84□□□□□ -0.51
Hoxd3P09027 Gm6736-201ENSMUST00000166583 948 ntBASIC11.84□□□□□ -0.51
Hoxd3P09027 Gm8318-201ENSMUST00000182954 872 ntBASIC11.84□□□□□ -0.51
Hoxd3P09027 Rps2-ps5-201ENSMUST00000184266 849 ntBASIC11.84□□□□□ -0.51
Hoxd3P09027 Mir7036b-201ENSMUST00000184791 63 ntBASIC11.84□□□□□ -0.51
Hoxd3P09027 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC11.84□□□□□ -0.51
Hoxd3P09027 Avpi1-201ENSMUST00000018965 1044 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Hoxd3P09027 Gm2756-201ENSMUST00000195851 400 ntBASIC11.84□□□□□ -0.51
Hoxd3P09027 Gm44596-201ENSMUST00000204223 647 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Hoxd3P09027 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Hoxd3P09027 Bloc1s5-203ENSMUST00000224902 612 ntBASIC11.84□□□□□ -0.51
Hoxd3P09027 AC225888.1-201ENSMUST00000227184 728 ntBASIC11.84□□□□□ -0.51
Hoxd3P09027 Phykpl-201ENSMUST00000020625 1609 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Hoxd3P09027 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Hoxd3P09027 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Hoxd3P09027 Zmym4-201ENSMUST00000106108 7102 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Hoxd3P09027 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Hoxd3P09027 Stard7-201ENSMUST00000110374 1530 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Hoxd3P09027 Nhs-202ENSMUST00000087085 8805 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Hoxd3P09027 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC11.84□□□□□ -0.51
Hoxd3P09027 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Hoxd3P09027 Fnbp1-208ENSMUST00000113560 4726 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Hoxd3P09027 Med26-201ENSMUST00000058534 2997 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Hoxd3P09027 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
Hoxd3P09027 Gm3739-201ENSMUST00000165744 2011 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Hoxd3P09027 Tbl1xr1-203ENSMUST00000193734 8237 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Hoxd3P09027 Gpr160-207ENSMUST00000166278 1689 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Hoxd3P09027 Cacng2-201ENSMUST00000019290 5510 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Hoxd3P09027 Fam81a-201ENSMUST00000034749 3703 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Hoxd3P09027 Tmem65-201ENSMUST00000072113 3747 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Hoxd3P09027 A330040F15Rik-202ENSMUST00000224046 1918 ntBASIC11.84□□□□□ -0.51
Hoxd3P09027 Rbm33-202ENSMUST00000059644 9510 ntAPPRIS P2 TSL 5 BASIC11.84□□□□□ -0.51
Hoxd3P09027 Casc4-201ENSMUST00000078752 4215 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Hoxd3P09027 Terf1-201ENSMUST00000027057 1581 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Hoxd3P09027 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Hoxd3P09027 Osbpl1a-206ENSMUST00000121774 2931 ntTSL 1 (best) BASIC11.83□□□□□ -0.51
Hoxd3P09027 Clec16a-204ENSMUST00000115824 6244 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.51
Hoxd3P09027 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.51
Hoxd3P09027 Clec16a-202ENSMUST00000066345 6244 ntAPPRIS P3 TSL 5 BASIC11.83□□□□□ -0.51
Hoxd3P09027 Ano8-201ENSMUST00000093450 3653 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.51
Hoxd3P09027 H2-T23-201ENSMUST00000102678 1472 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Hoxd3P09027 Aldh1a3-203ENSMUST00000174209 1496 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Hoxd3P09027 Celf1-206ENSMUST00000111451 4678 ntAPPRIS ALT1 TSL 5 BASIC11.83□□□□□ -0.52
Hoxd3P09027 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC11.83□□□□□ -0.52
Hoxd3P09027 Neu4-202ENSMUST00000190212 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Hoxd3P09027 Vapb-201ENSMUST00000067530 7029 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Hoxd3P09027 Jakmip1-202ENSMUST00000121010 2496 ntTSL 5 BASIC11.83□□□□□ -0.52
Hoxd3P09027 Kitl-202ENSMUST00000105283 5648 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Hoxd3P09027 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC11.83□□□□□ -0.52
Hoxd3P09027 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Hoxd3P09027 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
Hoxd3P09027 Cdk5rap1-202ENSMUST00000109730 1227 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Hoxd3P09027 Gm12849-201ENSMUST00000120013 739 ntBASIC11.83□□□□□ -0.52
Hoxd3P09027 Gm14363-201ENSMUST00000122304 409 ntBASIC11.83□□□□□ -0.52
Hoxd3P09027 Gm13375-201ENSMUST00000126967 854 ntTSL 2 BASIC11.83□□□□□ -0.52
Hoxd3P09027 Evx1-202ENSMUST00000129243 1034 ntTSL 3 BASIC11.83□□□□□ -0.52
Hoxd3P09027 Fhad1os2-201ENSMUST00000152351 945 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Hoxd3P09027 Gm17271-201ENSMUST00000165535 355 ntBASIC11.83□□□□□ -0.52
Hoxd3P09027 Gm24513-201ENSMUST00000174964 138 ntBASIC11.83□□□□□ -0.52
Hoxd3P09027 Gm27702-201ENSMUST00000184512 56 ntBASIC11.83□□□□□ -0.52
Hoxd3P09027 Gm27397-201ENSMUST00000184997 107 ntBASIC11.83□□□□□ -0.52
Hoxd3P09027 2210412B16Rik-201ENSMUST00000201281 498 ntBASIC11.83□□□□□ -0.52
Hoxd3P09027 Tnp2-201ENSMUST00000051297 549 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Hoxd3P09027 Yod1-201ENSMUST00000049813 6128 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 40.6 ms