Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim3Q9R1R2 Kif22-201ENSMUST00000032915 2115 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim3Q9R1R2 Car10-205ENSMUST00000107861 2613 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Trim3Q9R1R2 Rpn2-201ENSMUST00000029171 2621 ntTSL 5 BASIC14.36□□□□□ -0.11
Trim3Q9R1R2 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trim3Q9R1R2 Gemin5-202ENSMUST00000102711 4919 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Trim3Q9R1R2 Esr1-202ENSMUST00000105588 2733 ntTSL 5 BASIC14.35□□□□□ -0.11
Trim3Q9R1R2 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC14.35□□□□□ -0.11
Trim3Q9R1R2 Poli-201ENSMUST00000043286 2591 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Trim3Q9R1R2 Adgrb2-208ENSMUST00000121049 4871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim3Q9R1R2 Sigirr-201ENSMUST00000097958 1990 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim3Q9R1R2 Zfp612-202ENSMUST00000212754 4863 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim3Q9R1R2 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Trim3Q9R1R2 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim3Q9R1R2 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Trim3Q9R1R2 1810026B05Rik-205ENSMUST00000184855 409 ntTSL 3 BASIC14.35□□□□□ -0.11
Trim3Q9R1R2 Tac4-201ENSMUST00000021242 1251 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim3Q9R1R2 AL669916.2-201ENSMUST00000213219 358 ntTSL 2 BASIC14.35□□□□□ -0.11
Trim3Q9R1R2 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim3Q9R1R2 Aatk-202ENSMUST00000103019 5177 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim3Q9R1R2 Tmem116-204ENSMUST00000111795 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim3Q9R1R2 Abl1-201ENSMUST00000028190 5794 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim3Q9R1R2 Lmnb1-201ENSMUST00000025486 2843 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim3Q9R1R2 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim3Q9R1R2 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Trim3Q9R1R2 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim3Q9R1R2 Adam23-204ENSMUST00000114103 2655 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Trim3Q9R1R2 Ovca2-201ENSMUST00000071562 2670 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim3Q9R1R2 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim3Q9R1R2 Pld2-202ENSMUST00000108556 3391 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Trim3Q9R1R2 Des-201ENSMUST00000027409 3028 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim3Q9R1R2 Rapsn-201ENSMUST00000050323 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim3Q9R1R2 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC14.34□□□□□ -0.11
Trim3Q9R1R2 Hsph1-209ENSMUST00000202089 3054 ntTSL 5 BASIC14.34□□□□□ -0.11
Trim3Q9R1R2 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim3Q9R1R2 Slc35f4-205ENSMUST00000146164 2480 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Trim3Q9R1R2 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Trim3Q9R1R2 Cndp2-201ENSMUST00000025546 2050 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim3Q9R1R2 Myo9b-203ENSMUST00000170242 7297 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Trim3Q9R1R2 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Trim3Q9R1R2 Npr3-201ENSMUST00000066529 6892 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim3Q9R1R2 Pik3c2b-201ENSMUST00000077730 7928 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Trim3Q9R1R2 Gm13418-201ENSMUST00000119097 944 ntBASIC14.34□□□□□ -0.11
Trim3Q9R1R2 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC14.34□□□□□ -0.11
Trim3Q9R1R2 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC14.34□□□□□ -0.11
Trim3Q9R1R2 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Trim3Q9R1R2 Gm37584-201ENSMUST00000193595 1290 ntBASIC14.34□□□□□ -0.11
Trim3Q9R1R2 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Trim3Q9R1R2 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Trim3Q9R1R2 Aurkaip1-201ENSMUST00000084097 1159 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim3Q9R1R2 Gm5934-201ENSMUST00000120734 2588 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Trim3Q9R1R2 Jup-202ENSMUST00000107403 2386 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Trim3Q9R1R2 Tada3-201ENSMUST00000032410 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim3Q9R1R2 Klhl26-204ENSMUST00000209567 2615 ntTSL 3 BASIC14.34□□□□□ -0.11
Trim3Q9R1R2 Camk1g-204ENSMUST00000169907 1968 ntTSL 5 BASIC14.34□□□□□ -0.11
Trim3Q9R1R2 Ddit4l-201ENSMUST00000053855 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim3Q9R1R2 Nrxn1-204ENSMUST00000159778 3414 ntTSL 5 BASIC14.34□□□□□ -0.11
Trim3Q9R1R2 Fgf5-201ENSMUST00000031280 2501 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim3Q9R1R2 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
Trim3Q9R1R2 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Trim3Q9R1R2 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC14.33□□□□□ -0.11
Trim3Q9R1R2 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
Trim3Q9R1R2 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
Trim3Q9R1R2 Dhodh-209ENSMUST00000143900 1455 ntTSL 5 BASIC14.33□□□□□ -0.12
Trim3Q9R1R2 Tnfrsf13c-202ENSMUST00000109535 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim3Q9R1R2 Zbed5-201ENSMUST00000041466 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim3Q9R1R2 Zgpat-201ENSMUST00000029105 2293 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim3Q9R1R2 Gm27528-202ENSMUST00000222916 2012 ntBASIC14.33□□□□□ -0.12
Trim3Q9R1R2 Gm45844-204ENSMUST00000209833 1524 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Trim3Q9R1R2 Rbm15-201ENSMUST00000061772 4343 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim3Q9R1R2 Gm25990-201ENSMUST00000102440 86 ntBASIC14.33□□□□□ -0.12
Trim3Q9R1R2 Gm4609-201ENSMUST00000106443 1002 ntBASIC14.33□□□□□ -0.12
Trim3Q9R1R2 Gm5138-201ENSMUST00000113842 1002 ntBASIC14.33□□□□□ -0.12
Trim3Q9R1R2 Gm15191-201ENSMUST00000117933 1000 ntBASIC14.33□□□□□ -0.12
Trim3Q9R1R2 Gm12182-201ENSMUST00000118655 1008 ntBASIC14.33□□□□□ -0.12
Trim3Q9R1R2 Gm13882-201ENSMUST00000120886 1002 ntBASIC14.33□□□□□ -0.12
Trim3Q9R1R2 Slbp-205ENSMUST00000139518 1191 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
Trim3Q9R1R2 Gm10284-201ENSMUST00000145057 1005 ntBASIC14.33□□□□□ -0.12
Trim3Q9R1R2 Gm10481-201ENSMUST00000179228 1002 ntBASIC14.33□□□□□ -0.12
Trim3Q9R1R2 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC14.33□□□□□ -0.12
Trim3Q9R1R2 Gm2574-201ENSMUST00000181051 1002 ntBASIC14.33□□□□□ -0.12
Trim3Q9R1R2 Gm3200-201ENSMUST00000181493 1002 ntBASIC14.33□□□□□ -0.12
Trim3Q9R1R2 Gm8825-201ENSMUST00000182565 998 ntBASIC14.33□□□□□ -0.12
Trim3Q9R1R2 Gm4518-201ENSMUST00000182638 718 ntBASIC14.33□□□□□ -0.12
Trim3Q9R1R2 Gm8330-201ENSMUST00000182754 1008 ntBASIC14.33□□□□□ -0.12
Trim3Q9R1R2 Gm4575-201ENSMUST00000182991 1002 ntBASIC14.33□□□□□ -0.12
Trim3Q9R1R2 Gm8709-201ENSMUST00000183230 1012 ntBASIC14.33□□□□□ -0.12
Trim3Q9R1R2 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC14.33□□□□□ -0.12
Trim3Q9R1R2 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Trim3Q9R1R2 Gm9449-201ENSMUST00000207265 1011 ntBASIC14.33□□□□□ -0.12
Trim3Q9R1R2 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
Trim3Q9R1R2 Chmp2a-201ENSMUST00000005711 949 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim3Q9R1R2 Gm10293-201ENSMUST00000076317 1002 ntBASIC14.33□□□□□ -0.12
Trim3Q9R1R2 Gm6316-201ENSMUST00000082064 1020 ntBASIC14.33□□□□□ -0.12
Trim3Q9R1R2 2810474O19Rik-202ENSMUST00000100765 5356 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim3Q9R1R2 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim3Q9R1R2 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Trim3Q9R1R2 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Trim3Q9R1R2 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Trim3Q9R1R2 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 30.2 ms