Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Ucn-201ENSMUST00000043475 504 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Scn11aQ9R053 S100a13-201ENSMUST00000048138 715 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Scn11aQ9R053 Ccdc169-202ENSMUST00000061099 887 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
Scn11aQ9R053 Zmat5-201ENSMUST00000009220 792 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Scn11aQ9R053 Hnrnpa2b1-210ENSMUST00000204188 1518 ntTSL 5 BASIC17.88■□□□□ 0.45
Scn11aQ9R053 Fbxo25-201ENSMUST00000043520 2012 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
Scn11aQ9R053 Parg-204ENSMUST00000164137 3013 ntTSL 5 BASIC17.88■□□□□ 0.45
Scn11aQ9R053 Mrpl57-201ENSMUST00000022538 2877 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Scn11aQ9R053 N6amt1-202ENSMUST00000118115 1951 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Scn11aQ9R053 Gm42918-201ENSMUST00000199249 1580 ntBASIC17.88■□□□□ 0.45
Scn11aQ9R053 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Scn11aQ9R053 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Scn11aQ9R053 Zdhhc2-201ENSMUST00000049389 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Scn11aQ9R053 Gm43195-201ENSMUST00000200614 2332 ntBASIC17.87■□□□□ 0.45
Scn11aQ9R053 Gm833-201ENSMUST00000143133 884 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Scn11aQ9R053 Gm38225-201ENSMUST00000194001 393 ntBASIC17.87■□□□□ 0.45
Scn11aQ9R053 Dupd1-202ENSMUST00000224735 548 ntBASIC17.87■□□□□ 0.45
Scn11aQ9R053 Ydjc-202ENSMUST00000115702 1713 ntTSL 5 BASIC17.87■□□□□ 0.45
Scn11aQ9R053 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Scn11aQ9R053 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Scn11aQ9R053 Aurka-202ENSMUST00000109139 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Scn11aQ9R053 Aurka-201ENSMUST00000028997 1905 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
Scn11aQ9R053 1700113H08Rik-201ENSMUST00000169849 1332 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
Scn11aQ9R053 Gm10044-201ENSMUST00000081331 1312 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Scn11aQ9R053 Tubb3-201ENSMUST00000071134 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Scn11aQ9R053 Wac-201ENSMUST00000074919 3070 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Scn11aQ9R053 Pld4-201ENSMUST00000063888 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Scn11aQ9R053 Pcp2-202ENSMUST00000128566 1447 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
Scn11aQ9R053 Elf3-201ENSMUST00000003135 2095 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
Scn11aQ9R053 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Scn11aQ9R053 Gm21981-201ENSMUST00000143789 2721 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
Scn11aQ9R053 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Scn11aQ9R053 Ighv4-1-201ENSMUST00000103464 414 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
Scn11aQ9R053 Msmp-201ENSMUST00000107884 743 ntAPPRIS P1 TSL 3 BASIC17.86■□□□□ 0.45
Scn11aQ9R053 Gm9719-201ENSMUST00000162765 543 ntBASIC17.86■□□□□ 0.45
Scn11aQ9R053 Pabpn1l-201ENSMUST00000093059 1148 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Scn11aQ9R053 Bcam-201ENSMUST00000003061 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Scn11aQ9R053 Tcf21-202ENSMUST00000218002 1788 ntBASIC17.86■□□□□ 0.45
Scn11aQ9R053 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Scn11aQ9R053 Tmem184b-201ENSMUST00000074991 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Scn11aQ9R053 Rsu1-202ENSMUST00000114791 1604 ntTSL 5 BASIC17.86■□□□□ 0.45
Scn11aQ9R053 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Scn11aQ9R053 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Scn11aQ9R053 Park7-205ENSMUST00000105676 582 ntTSL 5 BASIC17.86■□□□□ 0.45
Scn11aQ9R053 Fis1-203ENSMUST00000111097 601 ntTSL 2 BASIC17.86■□□□□ 0.45
Scn11aQ9R053 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC17.86■□□□□ 0.45
Scn11aQ9R053 Gm27430-201ENSMUST00000184585 107 ntBASIC17.86■□□□□ 0.45
Scn11aQ9R053 Fis1-201ENSMUST00000019198 786 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Scn11aQ9R053 Gm44333-201ENSMUST00000197168 107 ntBASIC17.86■□□□□ 0.45
Scn11aQ9R053 Snx24-201ENSMUST00000025417 994 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Scn11aQ9R053 Hes5-201ENSMUST00000049621 1273 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Scn11aQ9R053 Tmem107-201ENSMUST00000075980 779 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Scn11aQ9R053 Ablim2-202ENSMUST00000101280 3042 ntTSL 5 BASIC17.86■□□□□ 0.45
Scn11aQ9R053 Dcdc2a-201ENSMUST00000036932 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Scn11aQ9R053 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Scn11aQ9R053 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC17.85■□□□□ 0.45
Scn11aQ9R053 Zfyve19-202ENSMUST00000102519 1505 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Scn11aQ9R053 Rgs14-201ENSMUST00000063771 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Scn11aQ9R053 Dpp7-201ENSMUST00000028332 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Scn11aQ9R053 Gnas-211ENSMUST00000109096 2465 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Scn11aQ9R053 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Scn11aQ9R053 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
Scn11aQ9R053 Gm16194-204ENSMUST00000141797 475 ntTSL 3 BASIC17.85■□□□□ 0.45
Scn11aQ9R053 Gm25144-201ENSMUST00000179561 110 ntBASIC17.85■□□□□ 0.45
Scn11aQ9R053 Gm25352-201ENSMUST00000179815 110 ntBASIC17.85■□□□□ 0.45
Scn11aQ9R053 Gm9899-201ENSMUST00000065519 555 ntBASIC17.85■□□□□ 0.45
Scn11aQ9R053 Ifnl2-201ENSMUST00000081684 702 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Scn11aQ9R053 Cxcr3-201ENSMUST00000056614 1731 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Scn11aQ9R053 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Scn11aQ9R053 Hivep3-201ENSMUST00000084306 2973 ntBASIC17.85■□□□□ 0.45
Scn11aQ9R053 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Scn11aQ9R053 Bcat2-202ENSMUST00000120864 1536 ntTSL 5 BASIC17.85■□□□□ 0.45
Scn11aQ9R053 Ccnb2-201ENSMUST00000034742 1531 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Scn11aQ9R053 Dpagt1-201ENSMUST00000054708 2205 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Scn11aQ9R053 Tmprss12-201ENSMUST00000096200 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Scn11aQ9R053 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Scn11aQ9R053 Tmem40-202ENSMUST00000112946 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Scn11aQ9R053 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Scn11aQ9R053 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Scn11aQ9R053 Gm6756-201ENSMUST00000180647 1620 ntBASIC17.84■□□□□ 0.45
Scn11aQ9R053 Gm8239-201ENSMUST00000204094 444 ntTSL 2 BASIC17.84■□□□□ 0.45
Scn11aQ9R053 Phgr1-201ENSMUST00000061360 538 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
Scn11aQ9R053 Gas2l2-201ENSMUST00000052521 2610 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Scn11aQ9R053 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Scn11aQ9R053 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Scn11aQ9R053 Zmynd11-204ENSMUST00000110635 3881 ntTSL 5 BASIC17.84■□□□□ 0.45
Scn11aQ9R053 Fgfr2-215ENSMUST00000122054 3323 ntAPPRIS P4 TSL 1 (best) BASIC17.84■□□□□ 0.45
Scn11aQ9R053 Gm27533-201ENSMUST00000183800 152 ntBASIC17.84■□□□□ 0.45
Scn11aQ9R053 Gm17837-201ENSMUST00000186435 985 ntBASIC17.84■□□□□ 0.45
Scn11aQ9R053 Gm45098-201ENSMUST00000207179 657 ntBASIC17.84■□□□□ 0.45
Scn11aQ9R053 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Scn11aQ9R053 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Scn11aQ9R053 Nsg2-201ENSMUST00000020537 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Scn11aQ9R053 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC17.84■□□□□ 0.45
Scn11aQ9R053 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
Scn11aQ9R053 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Scn11aQ9R053 P4ha2-202ENSMUST00000093107 2263 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Scn11aQ9R053 Zfp707-202ENSMUST00000109967 1703 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
Scn11aQ9R053 Ptpn6-210ENSMUST00000174265 1743 ntTSL 5 BASIC17.83■□□□□ 0.45
Scn11aQ9R053 Rgs9-201ENSMUST00000020920 2434 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 25.5 ms