Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Scn4aQ9ER60 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Scn4aQ9ER60 Bin2-205ENSMUST00000182814 1901 ntTSL 5 BASIC20.53■□□□□ 0.88
Scn4aQ9ER60 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Scn4aQ9ER60 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Scn4aQ9ER60 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Scn4aQ9ER60 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Scn4aQ9ER60 Hnf4aos-203ENSMUST00000141329 839 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Scn4aQ9ER60 Drap1-210ENSMUST00000148219 727 ntTSL 3 BASIC20.53■□□□□ 0.88
Scn4aQ9ER60 Rpl24-201ENSMUST00000023269 677 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Scn4aQ9ER60 Rpl10-202ENSMUST00000074085 855 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Scn4aQ9ER60 Ttr-201ENSMUST00000075312 1219 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Scn4aQ9ER60 Camk2b-205ENSMUST00000093355 1973 ntTSL 5 BASIC20.53■□□□□ 0.88
Scn4aQ9ER60 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Scn4aQ9ER60 D930015M05Rik-201ENSMUST00000126002 1190 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Scn4aQ9ER60 Pmepa1os-201ENSMUST00000150185 680 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Scn4aQ9ER60 2610306M01Rik-201ENSMUST00000185414 1042 ntBASIC20.52■□□□□ 0.88
Scn4aQ9ER60 Dmac1-201ENSMUST00000030103 741 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Scn4aQ9ER60 Slc25a47-201ENSMUST00000057026 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Scn4aQ9ER60 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
Scn4aQ9ER60 Gm13050-201ENSMUST00000122149 1345 ntBASIC20.52■□□□□ 0.88
Scn4aQ9ER60 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Scn4aQ9ER60 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Scn4aQ9ER60 Adck5-207ENSMUST00000160784 1998 ntTSL 5 BASIC20.52■□□□□ 0.87
Scn4aQ9ER60 Tfap2a-203ENSMUST00000223869 2037 ntBASIC20.52■□□□□ 0.87
Scn4aQ9ER60 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Scn4aQ9ER60 Crb3-204ENSMUST00000163763 868 ntAPPRIS P3 TSL 2 BASIC20.51■□□□□ 0.87
Scn4aQ9ER60 Gm2164-201ENSMUST00000184062 424 ntTSL 2 BASIC20.51■□□□□ 0.87
Scn4aQ9ER60 Chd3os-203ENSMUST00000218008 1026 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Scn4aQ9ER60 Gm17396-201ENSMUST00000172075 1655 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Scn4aQ9ER60 Gm45765-202ENSMUST00000212921 1313 ntTSL 5 BASIC20.51■□□□□ 0.87
Scn4aQ9ER60 Il18r1-204ENSMUST00000193391 1738 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Scn4aQ9ER60 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
Scn4aQ9ER60 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC20.51■□□□□ 0.87
Scn4aQ9ER60 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
Scn4aQ9ER60 Gm15393-201ENSMUST00000120499 219 ntBASIC20.5■□□□□ 0.87
Scn4aQ9ER60 4933406I18Rik-201ENSMUST00000124673 905 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Scn4aQ9ER60 H60b-202ENSMUST00000131558 1080 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
Scn4aQ9ER60 Gm24644-201ENSMUST00000157114 139 ntBASIC20.5■□□□□ 0.87
Scn4aQ9ER60 Mir5132-201ENSMUST00000175166 71 ntBASIC20.5■□□□□ 0.87
Scn4aQ9ER60 Gm7556-201ENSMUST00000201178 1084 ntBASIC20.5■□□□□ 0.87
Scn4aQ9ER60 Gm33460-201ENSMUST00000212286 536 ntTSL 5 BASIC20.5■□□□□ 0.87
Scn4aQ9ER60 AC156560.2-201ENSMUST00000221232 264 ntBASIC20.5■□□□□ 0.87
Scn4aQ9ER60 Txn1-201ENSMUST00000030051 1051 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Scn4aQ9ER60 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Scn4aQ9ER60 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Scn4aQ9ER60 Syngr2-201ENSMUST00000026649 1520 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Scn4aQ9ER60 Gm45751-201ENSMUST00000210185 1573 ntBASIC20.5■□□□□ 0.87
Scn4aQ9ER60 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Scn4aQ9ER60 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Scn4aQ9ER60 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC20.5■□□□□ 0.87
Scn4aQ9ER60 Gm13115-201ENSMUST00000156438 620 ntTSL 5 BASIC20.5■□□□□ 0.87
Scn4aQ9ER60 Gm7287-201ENSMUST00000205267 602 ntBASIC20.5■□□□□ 0.87
Scn4aQ9ER60 Zdhhc23-201ENSMUST00000036321 1380 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Scn4aQ9ER60 Gm7553-201ENSMUST00000185805 1426 ntBASIC20.5■□□□□ 0.87
Scn4aQ9ER60 Dnajc5g-201ENSMUST00000066544 1565 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
Scn4aQ9ER60 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
Scn4aQ9ER60 Nkx1-2-201ENSMUST00000054562 3264 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Scn4aQ9ER60 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Scn4aQ9ER60 2900093K20Rik-201ENSMUST00000190930 567 ntBASIC20.49■□□□□ 0.87
Scn4aQ9ER60 Gm38002-201ENSMUST00000193255 180 ntBASIC20.49■□□□□ 0.87
Scn4aQ9ER60 AC121804.3-201ENSMUST00000223420 295 ntBASIC20.49■□□□□ 0.87
Scn4aQ9ER60 Dnal4-202ENSMUST00000069877 1011 ntTSL 5 BASIC20.49■□□□□ 0.87
Scn4aQ9ER60 Zbtb25-205ENSMUST00000176509 1591 ntTSL 2 BASIC20.49■□□□□ 0.87
Scn4aQ9ER60 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC20.49■□□□□ 0.87
Scn4aQ9ER60 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Scn4aQ9ER60 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC20.49■□□□□ 0.87
Scn4aQ9ER60 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Scn4aQ9ER60 Prkg1-206ENSMUST00000182685 1628 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Scn4aQ9ER60 Asb10-203ENSMUST00000119657 1536 ntTSL 5 BASIC20.48■□□□□ 0.87
Scn4aQ9ER60 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
Scn4aQ9ER60 Upk1a-201ENSMUST00000006476 1421 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Scn4aQ9ER60 Tex264-201ENSMUST00000046735 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Scn4aQ9ER60 Gm12347-201ENSMUST00000127883 470 ntTSL 3 BASIC20.48■□□□□ 0.87
Scn4aQ9ER60 Cenpa-206ENSMUST00000149759 346 ntTSL 3 BASIC20.48■□□□□ 0.87
Scn4aQ9ER60 Ighv1-62-201ENSMUST00000193406 350 ntBASIC20.48■□□□□ 0.87
Scn4aQ9ER60 Atp5d-201ENSMUST00000003156 931 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Scn4aQ9ER60 Gm8225-201ENSMUST00000090257 879 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Scn4aQ9ER60 Armc9-205ENSMUST00000131412 2160 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Scn4aQ9ER60 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Scn4aQ9ER60 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
Scn4aQ9ER60 Gm10863-205ENSMUST00000148028 905 ntTSL 3 BASIC20.48■□□□□ 0.87
Scn4aQ9ER60 Tm2d2-202ENSMUST00000210536 727 ntTSL 3 BASIC20.48■□□□□ 0.87
Scn4aQ9ER60 Gm40466-201ENSMUST00000212174 422 ntBASIC20.48■□□□□ 0.87
Scn4aQ9ER60 Ppcdc-205ENSMUST00000214144 724 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Scn4aQ9ER60 Tpd52l1-205ENSMUST00000215515 857 ntTSL 2 BASIC20.48■□□□□ 0.87
Scn4aQ9ER60 Duoxa1-201ENSMUST00000028653 1026 ntAPPRIS P1 TSL 3 BASIC20.48■□□□□ 0.87
Scn4aQ9ER60 Rhox2a-201ENSMUST00000063340 795 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Scn4aQ9ER60 Isoc2b-201ENSMUST00000064547 1080 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Scn4aQ9ER60 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Scn4aQ9ER60 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Scn4aQ9ER60 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Scn4aQ9ER60 Gm45667-201ENSMUST00000210380 1316 ntBASIC20.47■□□□□ 0.87
Scn4aQ9ER60 Mif4gd-202ENSMUST00000106506 993 ntTSL 3 BASIC20.47■□□□□ 0.87
Scn4aQ9ER60 Gm11899-201ENSMUST00000142373 745 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Scn4aQ9ER60 Gm15444-201ENSMUST00000148335 388 ntTSL 5 BASIC20.47■□□□□ 0.87
Scn4aQ9ER60 Gm29152-201ENSMUST00000189284 325 ntTSL 5 BASIC20.47■□□□□ 0.87
Scn4aQ9ER60 Gm37259-201ENSMUST00000193903 849 ntBASIC20.47■□□□□ 0.87
Scn4aQ9ER60 Gm8839-201ENSMUST00000121279 1645 ntBASIC20.47■□□□□ 0.87
Scn4aQ9ER60 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 42.6 ms