Protein–RNA interactions for Protein: Q9EPU0

Upf1, Regulator of nonsense transcripts 1, mousemouse

Known RBP Predictions only

Length 1,124 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf1Q9EPU0 Gnpda2-207ENSMUST00000173927 1011 ntAPPRIS ALT1 TSL 5 BASIC17.14■□□□□ 0.33
Upf1Q9EPU0 Gm8652-201ENSMUST00000181363 964 ntBASIC17.14■□□□□ 0.33
Upf1Q9EPU0 2900093K20Rik-201ENSMUST00000190930 567 ntBASIC17.14■□□□□ 0.33
Upf1Q9EPU0 Gm45453-201ENSMUST00000211758 853 ntBASIC17.14■□□□□ 0.33
Upf1Q9EPU0 Tmem205-203ENSMUST00000213698 705 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
Upf1Q9EPU0 AC164573.1-201ENSMUST00000218616 963 ntTSL 5 BASIC17.14■□□□□ 0.33
Upf1Q9EPU0 AC149588.3-201ENSMUST00000227515 150 ntBASIC17.14■□□□□ 0.33
Upf1Q9EPU0 Atp6v1g1-201ENSMUST00000035301 1135 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Upf1Q9EPU0 H2bfm-201ENSMUST00000059808 1052 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
Upf1Q9EPU0 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Upf1Q9EPU0 Ptp4a2-207ENSMUST00000165853 3382 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Upf1Q9EPU0 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC17.14■□□□□ 0.33
Upf1Q9EPU0 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Upf1Q9EPU0 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
Upf1Q9EPU0 Urm1-201ENSMUST00000091142 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Upf1Q9EPU0 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Upf1Q9EPU0 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Upf1Q9EPU0 Fhl2-202ENSMUST00000185893 1421 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Upf1Q9EPU0 Phyh-201ENSMUST00000027975 1438 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Upf1Q9EPU0 Mtmr7-202ENSMUST00000048898 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Upf1Q9EPU0 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Upf1Q9EPU0 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
Upf1Q9EPU0 Dctn4-202ENSMUST00000223590 1530 ntBASIC17.13■□□□□ 0.33
Upf1Q9EPU0 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC17.13■□□□□ 0.33
Upf1Q9EPU0 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Upf1Q9EPU0 Gm5479-201ENSMUST00000160578 435 ntBASIC17.13■□□□□ 0.33
Upf1Q9EPU0 Gm27514-201ENSMUST00000183692 110 ntBASIC17.13■□□□□ 0.33
Upf1Q9EPU0 Gm29649-201ENSMUST00000185649 419 ntBASIC17.13■□□□□ 0.33
Upf1Q9EPU0 Gm38266-201ENSMUST00000194931 421 ntBASIC17.13■□□□□ 0.33
Upf1Q9EPU0 Snhg8-203ENSMUST00000199645 528 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Upf1Q9EPU0 Gm36198-201ENSMUST00000217490 416 ntTSL 3 BASIC17.13■□□□□ 0.33
Upf1Q9EPU0 AC156560.2-201ENSMUST00000221232 264 ntBASIC17.13■□□□□ 0.33
Upf1Q9EPU0 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Upf1Q9EPU0 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Upf1Q9EPU0 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Upf1Q9EPU0 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Upf1Q9EPU0 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Upf1Q9EPU0 Zfp707-202ENSMUST00000109967 1703 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Upf1Q9EPU0 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Upf1Q9EPU0 Ccnh-204ENSMUST00000164127 1718 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Upf1Q9EPU0 Vax2os-201ENSMUST00000123402 1435 ntTSL 5 BASIC17.13■□□□□ 0.33
Upf1Q9EPU0 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Upf1Q9EPU0 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Upf1Q9EPU0 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Upf1Q9EPU0 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC17.12■□□□□ 0.33
Upf1Q9EPU0 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Upf1Q9EPU0 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
Upf1Q9EPU0 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Upf1Q9EPU0 Gm12585-201ENSMUST00000117307 290 ntBASIC17.12■□□□□ 0.33
Upf1Q9EPU0 Drap1-210ENSMUST00000148219 727 ntTSL 3 BASIC17.12■□□□□ 0.33
Upf1Q9EPU0 Gm17111-201ENSMUST00000169981 411 ntTSL 3 BASIC17.12■□□□□ 0.33
Upf1Q9EPU0 Wfdc1-202ENSMUST00000212901 921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Upf1Q9EPU0 Ndufs6-201ENSMUST00000022097 568 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Upf1Q9EPU0 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Upf1Q9EPU0 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Upf1Q9EPU0 Tmem38a-201ENSMUST00000034244 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Upf1Q9EPU0 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Upf1Q9EPU0 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Upf1Q9EPU0 Gm15557-201ENSMUST00000109629 1380 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Upf1Q9EPU0 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Upf1Q9EPU0 Clec4g-201ENSMUST00000058040 1441 ntTSL 5 BASIC17.12■□□□□ 0.33
Upf1Q9EPU0 Teddm2-202ENSMUST00000123490 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Upf1Q9EPU0 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Upf1Q9EPU0 Aqp8-201ENSMUST00000033023 1487 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Upf1Q9EPU0 S100b-201ENSMUST00000036387 1484 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Upf1Q9EPU0 Rnaseh2a-210ENSMUST00000147812 1532 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Upf1Q9EPU0 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Upf1Q9EPU0 Prss45-201ENSMUST00000011391 1232 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Upf1Q9EPU0 Gm13461-201ENSMUST00000120980 662 ntBASIC17.11■□□□□ 0.33
Upf1Q9EPU0 Gm11772-201ENSMUST00000136542 532 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Upf1Q9EPU0 Grp-202ENSMUST00000173530 617 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
Upf1Q9EPU0 Fggy-203ENSMUST00000107091 1395 ntTSL 5 BASIC17.11■□□□□ 0.33
Upf1Q9EPU0 Acvrl1-204ENSMUST00000120028 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Upf1Q9EPU0 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC17.11■□□□□ 0.33
Upf1Q9EPU0 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Upf1Q9EPU0 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Upf1Q9EPU0 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Upf1Q9EPU0 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Upf1Q9EPU0 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Upf1Q9EPU0 Pdlim7-201ENSMUST00000046246 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Upf1Q9EPU0 Hsd3b7-202ENSMUST00000106271 1713 ntTSL 5 BASIC17.1■□□□□ 0.33
Upf1Q9EPU0 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Upf1Q9EPU0 Gm45293-201ENSMUST00000209754 1812 ntBASIC17.1■□□□□ 0.33
Upf1Q9EPU0 Fam171b-201ENSMUST00000051454 5614 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Upf1Q9EPU0 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Upf1Q9EPU0 Vrk3-201ENSMUST00000002275 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Upf1Q9EPU0 Mir877-201ENSMUST00000104738 85 ntBASIC17.1■□□□□ 0.33
Upf1Q9EPU0 Gm12384-201ENSMUST00000119228 919 ntBASIC17.1■□□□□ 0.33
Upf1Q9EPU0 Hoxb5os-202ENSMUST00000150698 596 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Upf1Q9EPU0 Fam24a-203ENSMUST00000207784 600 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Upf1Q9EPU0 Mccc2-201ENSMUST00000022148 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Upf1Q9EPU0 Tmem179-202ENSMUST00000222836 521 ntTSL 5 BASIC17.1■□□□□ 0.33
Upf1Q9EPU0 Txn1-201ENSMUST00000030051 1051 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Upf1Q9EPU0 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Upf1Q9EPU0 Bcat2-202ENSMUST00000120864 1536 ntTSL 5 BASIC17.1■□□□□ 0.33
Upf1Q9EPU0 Trim34b-201ENSMUST00000106847 1827 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Upf1Q9EPU0 Osbpl10-201ENSMUST00000046627 1872 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Upf1Q9EPU0 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Upf1Q9EPU0 Pde8b-208ENSMUST00000162292 4235 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Upf1Q9EPU0 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 43.8 ms