Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Nrg1-218ENSMUST00000209107 2972 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Cdc40Q9DC48 Hic2-201ENSMUST00000090190 6354 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cdc40Q9DC48 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Cdc40Q9DC48 Dmrtb1-201ENSMUST00000069271 1861 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Cdc40Q9DC48 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cdc40Q9DC48 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cdc40Q9DC48 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cdc40Q9DC48 Gm7669-201ENSMUST00000210184 1603 ntBASIC14.17□□□□□ -0.14
Cdc40Q9DC48 Spatc1-201ENSMUST00000074173 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cdc40Q9DC48 Gm14140-201ENSMUST00000119999 995 ntBASIC14.17□□□□□ -0.14
Cdc40Q9DC48 Banf1-202ENSMUST00000170010 742 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cdc40Q9DC48 Gm27628-201ENSMUST00000184911 107 ntBASIC14.17□□□□□ -0.14
Cdc40Q9DC48 Syce1l-204ENSMUST00000212269 753 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cdc40Q9DC48 BC031181-201ENSMUST00000040284 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cdc40Q9DC48 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cdc40Q9DC48 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cdc40Q9DC48 P2rx6-203ENSMUST00000171002 1353 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Cdc40Q9DC48 Alg3-201ENSMUST00000045918 1451 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cdc40Q9DC48 Prkab1-202ENSMUST00000111999 2026 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
Cdc40Q9DC48 Tstd3-201ENSMUST00000029915 1588 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cdc40Q9DC48 Gnb1-201ENSMUST00000030940 3131 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cdc40Q9DC48 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cdc40Q9DC48 Arf2-202ENSMUST00000063347 2660 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cdc40Q9DC48 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cdc40Q9DC48 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cdc40Q9DC48 Slc35e4-202ENSMUST00000109995 3063 ntAPPRIS ALT1 TSL 5 BASIC14.16□□□□□ -0.14
Cdc40Q9DC48 Slc35e4-201ENSMUST00000051207 3059 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cdc40Q9DC48 Kcnj6-202ENSMUST00000099508 3086 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cdc40Q9DC48 Gm42901-201ENSMUST00000197735 3171 ntBASIC14.16□□□□□ -0.14
Cdc40Q9DC48 Sh2d4a-201ENSMUST00000066594 2718 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cdc40Q9DC48 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Cdc40Q9DC48 Rapsn-201ENSMUST00000050323 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cdc40Q9DC48 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cdc40Q9DC48 Pcdha4-202ENSMUST00000192512 5363 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cdc40Q9DC48 Dmxl1-202ENSMUST00000180611 11319 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cdc40Q9DC48 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cdc40Q9DC48 Dennd5b-201ENSMUST00000111557 9831 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Cdc40Q9DC48 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cdc40Q9DC48 Ap2s1-204ENSMUST00000205607 372 ntTSL 3 BASIC14.16□□□□□ -0.14
Cdc40Q9DC48 AC117588.1-201ENSMUST00000228510 999 ntBASIC14.16□□□□□ -0.14
Cdc40Q9DC48 1700021F07Rik-201ENSMUST00000029023 646 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cdc40Q9DC48 Rbpms-202ENSMUST00000033995 1039 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cdc40Q9DC48 Cacna2d1-205ENSMUST00000167946 7436 ntAPPRIS ALT1 TSL 5 BASIC14.16□□□□□ -0.14
Cdc40Q9DC48 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cdc40Q9DC48 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Cdc40Q9DC48 Stx7-201ENSMUST00000020174 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cdc40Q9DC48 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cdc40Q9DC48 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cdc40Q9DC48 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cdc40Q9DC48 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cdc40Q9DC48 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC14.16□□□□□ -0.14
Cdc40Q9DC48 Cgnl1-203ENSMUST00000122065 4487 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cdc40Q9DC48 1600020E01Rik-207ENSMUST00000204738 1997 ntTSL 5 BASIC14.16□□□□□ -0.14
Cdc40Q9DC48 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
Cdc40Q9DC48 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cdc40Q9DC48 Edem2-201ENSMUST00000040833 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cdc40Q9DC48 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cdc40Q9DC48 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cdc40Q9DC48 Gm29340-201ENSMUST00000188763 3854 ntBASIC14.16□□□□□ -0.14
Cdc40Q9DC48 Gdpd2-202ENSMUST00000113744 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cdc40Q9DC48 Lbp-201ENSMUST00000016168 2525 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cdc40Q9DC48 Itga8-201ENSMUST00000028106 5812 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cdc40Q9DC48 Tox3-201ENSMUST00000109621 3356 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cdc40Q9DC48 Foxp4-201ENSMUST00000097311 3197 ntAPPRIS P4 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cdc40Q9DC48 Vps51-201ENSMUST00000025711 2489 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cdc40Q9DC48 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Cdc40Q9DC48 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cdc40Q9DC48 Samm50-201ENSMUST00000023071 1673 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cdc40Q9DC48 Krt16-201ENSMUST00000007280 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cdc40Q9DC48 Synm-201ENSMUST00000051389 6953 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cdc40Q9DC48 Zmynd11-207ENSMUST00000110638 4003 ntTSL 5 BASIC14.15□□□□□ -0.14
Cdc40Q9DC48 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cdc40Q9DC48 Aig1-202ENSMUST00000105534 617 ntTSL 5 BASIC14.15□□□□□ -0.14
Cdc40Q9DC48 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cdc40Q9DC48 Tmem217-201ENSMUST00000114683 904 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cdc40Q9DC48 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
Cdc40Q9DC48 Ccnd3-208ENSMUST00000182539 931 ntTSL 2 BASIC14.15□□□□□ -0.14
Cdc40Q9DC48 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Cdc40Q9DC48 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cdc40Q9DC48 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Cdc40Q9DC48 Spag16-201ENSMUST00000065425 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cdc40Q9DC48 Gm27528-202ENSMUST00000222916 2012 ntBASIC14.15□□□□□ -0.14
Cdc40Q9DC48 Slc35c2-203ENSMUST00000109299 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cdc40Q9DC48 A330040F15Rik-202ENSMUST00000224046 1918 ntBASIC14.15□□□□□ -0.14
Cdc40Q9DC48 Dsel-201ENSMUST00000035462 5759 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cdc40Q9DC48 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cdc40Q9DC48 Ext2-201ENSMUST00000028623 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cdc40Q9DC48 St6galnac2-201ENSMUST00000079545 3643 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cdc40Q9DC48 Stard7-201ENSMUST00000110374 1530 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Cdc40Q9DC48 Gm8909-203ENSMUST00000173353 1428 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Cdc40Q9DC48 Lrrc56-203ENSMUST00000084446 2390 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cdc40Q9DC48 Gm28372-201ENSMUST00000188900 1876 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Cdc40Q9DC48 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cdc40Q9DC48 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cdc40Q9DC48 Synm-204ENSMUST00000208231 4457 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cdc40Q9DC48 Prkab2-201ENSMUST00000045743 5006 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cdc40Q9DC48 Ruvbl2-205ENSMUST00000211214 2312 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cdc40Q9DC48 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Cdc40Q9DC48 Arid5a-208ENSMUST00000137906 5504 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Cdc40Q9DC48 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 55.3 ms