Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ddx28Q9CWT6 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ddx28Q9CWT6 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ddx28Q9CWT6 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ddx28Q9CWT6 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ddx28Q9CWT6 Rps6ka5-201ENSMUST00000043599 4406 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ddx28Q9CWT6 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ddx28Q9CWT6 Mbp-203ENSMUST00000075372 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ddx28Q9CWT6 Satb2-201ENSMUST00000042857 6277 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ddx28Q9CWT6 Creg2-201ENSMUST00000053355 6091 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ddx28Q9CWT6 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ddx28Q9CWT6 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx28Q9CWT6 Kit-204ENSMUST00000144270 5241 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx28Q9CWT6 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx28Q9CWT6 Fbxo41-202ENSMUST00000161078 6562 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx28Q9CWT6 AC174678.1-201ENSMUST00000228007 2749 ntBASIC14.31□□□□□ -0.12
Ddx28Q9CWT6 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx28Q9CWT6 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx28Q9CWT6 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx28Q9CWT6 Nop53-201ENSMUST00000044158 3176 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx28Q9CWT6 Dnm1-217ENSMUST00000202578 2820 ntAPPRIS P2 TSL 5 BASIC14.31□□□□□ -0.12
Ddx28Q9CWT6 Cflar-204ENSMUST00000114309 2010 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx28Q9CWT6 Myrf-201ENSMUST00000088013 5674 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Ddx28Q9CWT6 Olfr718-ps1-203ENSMUST00000215102 4913 ntAPPRIS P5 TSL 5 BASIC14.31□□□□□ -0.12
Ddx28Q9CWT6 Itga8-201ENSMUST00000028106 5812 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx28Q9CWT6 Rabggta-203ENSMUST00000169237 2547 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx28Q9CWT6 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC14.31□□□□□ -0.12
Ddx28Q9CWT6 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Ddx28Q9CWT6 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx28Q9CWT6 Tdg-201ENSMUST00000092266 2959 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx28Q9CWT6 Arhgef40-220ENSMUST00000182909 5108 ntAPPRIS P4 TSL 5 BASIC14.31□□□□□ -0.12
Ddx28Q9CWT6 Npr3-201ENSMUST00000066529 6892 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx28Q9CWT6 Plxna1-202ENSMUST00000163139 9034 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx28Q9CWT6 Emilin3-201ENSMUST00000057169 3547 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx28Q9CWT6 Fam159b-201ENSMUST00000043061 1310 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx28Q9CWT6 Rgs20-201ENSMUST00000002533 1778 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx28Q9CWT6 Disc1-207ENSMUST00000121953 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx28Q9CWT6 Clcn2-201ENSMUST00000007207 3128 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx28Q9CWT6 Tnn-201ENSMUST00000039178 5817 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx28Q9CWT6 Pxylp1-204ENSMUST00000120101 3189 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx28Q9CWT6 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx28Q9CWT6 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx28Q9CWT6 Hist1h2be-202ENSMUST00000091704 2480 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx28Q9CWT6 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ddx28Q9CWT6 St6gal2-202ENSMUST00000086878 2606 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Ddx28Q9CWT6 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Ddx28Q9CWT6 Gins2-201ENSMUST00000034278 3900 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ddx28Q9CWT6 Hs3st3a1-201ENSMUST00000058652 3939 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ddx28Q9CWT6 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC14.3□□□□□ -0.12
Ddx28Q9CWT6 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ddx28Q9CWT6 Gm38327-201ENSMUST00000195852 1755 ntBASIC14.3□□□□□ -0.12
Ddx28Q9CWT6 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ddx28Q9CWT6 Smarca5-201ENSMUST00000043359 6113 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ddx28Q9CWT6 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ddx28Q9CWT6 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ddx28Q9CWT6 Slc44a3-201ENSMUST00000039197 2620 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ddx28Q9CWT6 Islr2-202ENSMUST00000163200 4123 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ddx28Q9CWT6 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Ddx28Q9CWT6 Slc27a1-201ENSMUST00000034267 2795 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ddx28Q9CWT6 Mfsd6-201ENSMUST00000087701 3493 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ddx28Q9CWT6 Syde2-204ENSMUST00000212479 3810 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Ddx28Q9CWT6 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ddx28Q9CWT6 Sgpl1-202ENSMUST00000122259 4102 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ddx28Q9CWT6 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Ddx28Q9CWT6 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ddx28Q9CWT6 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ddx28Q9CWT6 Ggn-202ENSMUST00000098609 2653 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ddx28Q9CWT6 Cdkl3-209ENSMUST00000120374 2770 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Ddx28Q9CWT6 Cdkl3-201ENSMUST00000063303 2765 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ddx28Q9CWT6 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC14.29□□□□□ -0.12
Ddx28Q9CWT6 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ddx28Q9CWT6 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ddx28Q9CWT6 Lrrc56-201ENSMUST00000047093 2197 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ddx28Q9CWT6 Vps37c-201ENSMUST00000087951 2415 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ddx28Q9CWT6 Kcnc4-201ENSMUST00000009617 3667 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ddx28Q9CWT6 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ddx28Q9CWT6 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Ddx28Q9CWT6 Gm7507-201ENSMUST00000183053 1008 ntBASIC14.29□□□□□ -0.12
Ddx28Q9CWT6 Gm27742-201ENSMUST00000184667 60 ntBASIC14.29□□□□□ -0.12
Ddx28Q9CWT6 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Ddx28Q9CWT6 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ddx28Q9CWT6 Ttc14-202ENSMUST00000108210 2684 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Ddx28Q9CWT6 Nsun7-203ENSMUST00000201100 2775 ntAPPRIS P3 TSL 5 BASIC14.29□□□□□ -0.12
Ddx28Q9CWT6 Cadps2-213ENSMUST00000166458 4598 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Ddx28Q9CWT6 Lats2-210ENSMUST00000174694 3287 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
Ddx28Q9CWT6 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ddx28Q9CWT6 9530082P21Rik-202ENSMUST00000181291 1798 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Ddx28Q9CWT6 Tmem110-201ENSMUST00000006701 3742 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ddx28Q9CWT6 Cd151-202ENSMUST00000106000 1865 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Ddx28Q9CWT6 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ddx28Q9CWT6 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ddx28Q9CWT6 Gm38058-201ENSMUST00000194323 4368 ntBASIC14.29□□□□□ -0.12
Ddx28Q9CWT6 Kif9-204ENSMUST00000198043 2233 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Ddx28Q9CWT6 Crem-201ENSMUST00000025069 2931 ntTSL 5 BASIC14.28□□□□□ -0.12
Ddx28Q9CWT6 Tbc1d4-209ENSMUST00000161991 6483 ntAPPRIS P2 TSL 5 BASIC14.28□□□□□ -0.12
Ddx28Q9CWT6 Mpped1-201ENSMUST00000046168 3265 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ddx28Q9CWT6 Kif7-204ENSMUST00000184137 4093 ntAPPRIS P3 TSL 5 BASIC14.28□□□□□ -0.12
Ddx28Q9CWT6 Sik1-201ENSMUST00000024839 4511 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ddx28Q9CWT6 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC14.28□□□□□ -0.12
Ddx28Q9CWT6 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 24.2 ms