Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Arhgef9-219ENSMUST00000199920 1976 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
Msh4Q99MT2 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Msh4Q99MT2 Tex264-201ENSMUST00000046735 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Msh4Q99MT2 Phospho2-202ENSMUST00000112266 2194 ntAPPRIS P1 TSL 3 BASIC14.87□□□□□ -0.03
Msh4Q99MT2 Idh2-201ENSMUST00000107384 1745 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Msh4Q99MT2 Mdp1-201ENSMUST00000002400 1733 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Msh4Q99MT2 Gm15173-201ENSMUST00000122049 433 ntBASIC14.87□□□□□ -0.03
Msh4Q99MT2 4930570G19Rik-204ENSMUST00000149387 986 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Msh4Q99MT2 Ubl5-204ENSMUST00000160682 489 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
Msh4Q99MT2 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC14.87□□□□□ -0.03
Msh4Q99MT2 Hist1h2ak-201ENSMUST00000074752 393 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
Msh4Q99MT2 Arhgap44-201ENSMUST00000047463 4074 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Msh4Q99MT2 Dhodh-209ENSMUST00000143900 1455 ntTSL 5 BASIC14.87□□□□□ -0.03
Msh4Q99MT2 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Msh4Q99MT2 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC14.87□□□□□ -0.03
Msh4Q99MT2 Arsi-201ENSMUST00000040359 2975 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Msh4Q99MT2 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC14.87□□□□□ -0.03
Msh4Q99MT2 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
Msh4Q99MT2 Brsk2-202ENSMUST00000075528 2160 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Msh4Q99MT2 Tfap2a-203ENSMUST00000223869 2037 ntBASIC14.87□□□□□ -0.03
Msh4Q99MT2 Dffb-201ENSMUST00000030893 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Msh4Q99MT2 Arvcf-205ENSMUST00000115614 4698 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Msh4Q99MT2 Tstd3-201ENSMUST00000029915 1588 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Msh4Q99MT2 Slc30a5-201ENSMUST00000067246 3179 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Msh4Q99MT2 Ttc14-202ENSMUST00000108210 2684 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
Msh4Q99MT2 Disc1-205ENSMUST00000117658 2671 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
Msh4Q99MT2 Fgfr1op2-204ENSMUST00000111663 2880 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Msh4Q99MT2 Sox1ot-202ENSMUST00000186174 7420 ntTSL 5 BASIC14.86□□□□□ -0.03
Msh4Q99MT2 Gm6257-201ENSMUST00000163864 910 ntBASIC14.86□□□□□ -0.03
Msh4Q99MT2 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC14.86□□□□□ -0.03
Msh4Q99MT2 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Msh4Q99MT2 Gm42413-201ENSMUST00000196216 338 ntTSL 5 BASIC14.86□□□□□ -0.03
Msh4Q99MT2 Gm6089-201ENSMUST00000197666 938 ntBASIC14.86□□□□□ -0.03
Msh4Q99MT2 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Msh4Q99MT2 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Msh4Q99MT2 AC138767.1-201ENSMUST00000222661 415 ntBASIC14.86□□□□□ -0.03
Msh4Q99MT2 Pgm1-201ENSMUST00000087324 2369 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Msh4Q99MT2 Alas2-201ENSMUST00000066337 2037 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
Msh4Q99MT2 Gm26613-201ENSMUST00000180919 1457 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Msh4Q99MT2 Por-202ENSMUST00000122113 2606 ntTSL 2 BASIC14.86□□□□□ -0.03
Msh4Q99MT2 Sgpp1-202ENSMUST00000220285 3200 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Msh4Q99MT2 Zfp24-203ENSMUST00000153337 1513 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Msh4Q99MT2 Gm45844-204ENSMUST00000209833 1524 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
Msh4Q99MT2 Sppl2b-201ENSMUST00000035597 2869 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Msh4Q99MT2 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
Msh4Q99MT2 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Msh4Q99MT2 Slc44a5-201ENSMUST00000089948 4098 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Msh4Q99MT2 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
Msh4Q99MT2 Sigirr-201ENSMUST00000097958 1990 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Msh4Q99MT2 Mbtps2-201ENSMUST00000058098 4797 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Msh4Q99MT2 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Msh4Q99MT2 Ica1l-201ENSMUST00000027172 3650 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Msh4Q99MT2 Rbfox3-205ENSMUST00000117731 3084 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Msh4Q99MT2 Hnrnpul1-205ENSMUST00000206832 3784 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Msh4Q99MT2 Lhx1os-201ENSMUST00000126072 589 ntTSL 3 BASIC14.85□□□□□ -0.03
Msh4Q99MT2 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Msh4Q99MT2 Cyhr1-204ENSMUST00000177359 1110 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Msh4Q99MT2 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC14.85□□□□□ -0.03
Msh4Q99MT2 A830052D11Rik-201ENSMUST00000181729 1130 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Msh4Q99MT2 1700028B04Rik-202ENSMUST00000190841 971 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Msh4Q99MT2 Myl12b-201ENSMUST00000038446 1253 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Msh4Q99MT2 Lhb-201ENSMUST00000072453 678 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
Msh4Q99MT2 Ythdf2-201ENSMUST00000085181 955 ntTSL 2 BASIC14.85□□□□□ -0.03
Msh4Q99MT2 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Msh4Q99MT2 Arhgef12-202ENSMUST00000165665 10752 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Msh4Q99MT2 Rhd-201ENSMUST00000030627 1514 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Msh4Q99MT2 Gm10584-201ENSMUST00000207036 2628 ntBASIC14.85□□□□□ -0.03
Msh4Q99MT2 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Msh4Q99MT2 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
Msh4Q99MT2 Ppp4r4-201ENSMUST00000021631 3964 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Msh4Q99MT2 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
Msh4Q99MT2 Sbno2-204ENSMUST00000217972 2462 ntTSL 2 BASIC14.85□□□□□ -0.03
Msh4Q99MT2 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Msh4Q99MT2 Pus1-204ENSMUST00000112426 1389 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Msh4Q99MT2 Fbxo30-202ENSMUST00000129456 5060 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Msh4Q99MT2 Efcab14-204ENSMUST00000106525 2792 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Msh4Q99MT2 Narfl-201ENSMUST00000002350 2555 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Msh4Q99MT2 Zfp651-201ENSMUST00000093772 6353 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
Msh4Q99MT2 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Msh4Q99MT2 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Msh4Q99MT2 Slc35c2-203ENSMUST00000109299 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Msh4Q99MT2 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Msh4Q99MT2 Cgn-203ENSMUST00000153263 2210 ntTSL 2 BASIC14.84□□□□□ -0.03
Msh4Q99MT2 Gm45605-201ENSMUST00000210265 4269 ntBASIC14.84□□□□□ -0.03
Msh4Q99MT2 Csnk2a2-201ENSMUST00000056919 3773 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Msh4Q99MT2 Slc32a1-201ENSMUST00000045738 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Msh4Q99MT2 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC14.84□□□□□ -0.03
Msh4Q99MT2 Gm15677-201ENSMUST00000152302 766 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Msh4Q99MT2 Gm20478-201ENSMUST00000173648 1031 ntTSL 3 BASIC14.84□□□□□ -0.03
Msh4Q99MT2 Thoc7-201ENSMUST00000065865 937 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Msh4Q99MT2 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Msh4Q99MT2 Slc43a3-201ENSMUST00000090726 2583 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Msh4Q99MT2 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Msh4Q99MT2 Frmd5-207ENSMUST00000138157 4230 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Msh4Q99MT2 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Msh4Q99MT2 H2-K1-201ENSMUST00000025181 1605 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
Msh4Q99MT2 Gypc-203ENSMUST00000174459 2180 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
Msh4Q99MT2 Rcor1-202ENSMUST00000116388 2720 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Msh4Q99MT2 Gm45351-201ENSMUST00000210683 2545 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Msh4Q99MT2 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 88.3 ms