Protein–RNA interactions for Protein: Q6Q899

Ddx58, Probable ATP-dependent RNA helicase DDX58, mousemouse

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx58Q6Q899 Gm27198-201ENSMUST00000184172 1517 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Ddx58Q6Q899 Dlx1-201ENSMUST00000037119 4111 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ddx58Q6Q899 Dhcr24-201ENSMUST00000047973 4028 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ddx58Q6Q899 Ccdc166-201ENSMUST00000182172 2584 ntBASIC18.79■□□□□ 0.6
Ddx58Q6Q899 Hist1h4n-201ENSMUST00000102979 430 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Ddx58Q6Q899 Hist1h4m-201ENSMUST00000104941 402 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Ddx58Q6Q899 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Ddx58Q6Q899 Slc36a3os-201ENSMUST00000155883 520 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Ddx58Q6Q899 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Ddx58Q6Q899 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC18.79■□□□□ 0.6
Ddx58Q6Q899 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC18.79■□□□□ 0.6
Ddx58Q6Q899 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC18.79■□□□□ 0.6
Ddx58Q6Q899 Gm37171-201ENSMUST00000192636 1185 ntBASIC18.79■□□□□ 0.6
Ddx58Q6Q899 Gm43474-201ENSMUST00000196415 774 ntBASIC18.79■□□□□ 0.6
Ddx58Q6Q899 4930593A02Rik-202ENSMUST00000203879 938 ntTSL 5 BASIC18.79■□□□□ 0.6
Ddx58Q6Q899 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ddx58Q6Q899 Khk-201ENSMUST00000031053 1257 ntTSL 5 BASIC18.79■□□□□ 0.6
Ddx58Q6Q899 Krtap9-3-201ENSMUST00000062683 759 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Ddx58Q6Q899 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Ddx58Q6Q899 Otub1-201ENSMUST00000025679 1713 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ddx58Q6Q899 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ddx58Q6Q899 Dgkz-202ENSMUST00000099709 3512 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Ddx58Q6Q899 Gm34016-201ENSMUST00000222678 1384 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Ddx58Q6Q899 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ddx58Q6Q899 AC093043.3-201ENSMUST00000226531 2273 ntBASIC18.79■□□□□ 0.6
Ddx58Q6Q899 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ddx58Q6Q899 Fosl2-201ENSMUST00000031017 6537 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx58Q6Q899 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
Ddx58Q6Q899 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx58Q6Q899 Tex13a-201ENSMUST00000096314 1317 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx58Q6Q899 Gm42918-201ENSMUST00000199249 1580 ntBASIC18.78■□□□□ 0.6
Ddx58Q6Q899 Ppfia3-207ENSMUST00000211067 4565 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Ddx58Q6Q899 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC18.78■□□□□ 0.6
Ddx58Q6Q899 Zfp74-203ENSMUST00000108211 1278 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx58Q6Q899 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC18.78■□□□□ 0.6
Ddx58Q6Q899 Gm15920-201ENSMUST00000118998 402 ntBASIC18.78■□□□□ 0.6
Ddx58Q6Q899 Gm12017-201ENSMUST00000122453 1003 ntBASIC18.78■□□□□ 0.6
Ddx58Q6Q899 Gm43125-201ENSMUST00000201724 730 ntBASIC18.78■□□□□ 0.6
Ddx58Q6Q899 AC164567.1-201ENSMUST00000219185 960 ntBASIC18.78■□□□□ 0.6
Ddx58Q6Q899 Dnal1-201ENSMUST00000046340 790 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx58Q6Q899 Rnf138rt1-201ENSMUST00000059320 1191 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
Ddx58Q6Q899 Apol7d-201ENSMUST00000097699 826 ntTSL 2 BASIC18.78■□□□□ 0.6
Ddx58Q6Q899 Vps37a-201ENSMUST00000098817 6379 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx58Q6Q899 Men1-206ENSMUST00000113502 2652 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx58Q6Q899 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx58Q6Q899 Dhfr-201ENSMUST00000022218 5347 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx58Q6Q899 2310011J03Rik-201ENSMUST00000020341 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx58Q6Q899 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx58Q6Q899 Axin1-202ENSMUST00000118904 2833 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx58Q6Q899 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ddx58Q6Q899 Disc1-205ENSMUST00000117658 2671 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ddx58Q6Q899 Celf4-206ENSMUST00000224553 1729 ntBASIC18.77■□□□□ 0.6
Ddx58Q6Q899 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC18.77■□□□□ 0.6
Ddx58Q6Q899 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
Ddx58Q6Q899 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ddx58Q6Q899 Cdyl2-201ENSMUST00000109102 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ddx58Q6Q899 Tmsb10-203ENSMUST00000114050 570 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ddx58Q6Q899 Nckipsd-206ENSMUST00000195323 467 ntTSL 3 BASIC18.77■□□□□ 0.6
Ddx58Q6Q899 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Ddx58Q6Q899 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC18.77■□□□□ 0.6
Ddx58Q6Q899 AC154621.1-201ENSMUST00000226155 1119 ntBASIC18.77■□□□□ 0.6
Ddx58Q6Q899 Eef1akmt2-201ENSMUST00000033257 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ddx58Q6Q899 Lbp-201ENSMUST00000016168 2525 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ddx58Q6Q899 Iars2-201ENSMUST00000027921 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Ddx58Q6Q899 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Ddx58Q6Q899 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Ddx58Q6Q899 Elmo2-202ENSMUST00000074046 3502 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
Ddx58Q6Q899 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ddx58Q6Q899 4933434E20Rik-204ENSMUST00000159064 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ddx58Q6Q899 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC18.76■□□□□ 0.59
Ddx58Q6Q899 Ube2j2-201ENSMUST00000024056 3483 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Ddx58Q6Q899 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ddx58Q6Q899 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
Ddx58Q6Q899 Mterf4-202ENSMUST00000112942 1525 ntTSL 2 BASIC18.76■□□□□ 0.59
Ddx58Q6Q899 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ddx58Q6Q899 Chac1-201ENSMUST00000028780 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ddx58Q6Q899 Gm6973-201ENSMUST00000117080 721 ntBASIC18.76■□□□□ 0.59
Ddx58Q6Q899 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
Ddx58Q6Q899 Gm15593-201ENSMUST00000122085 1008 ntBASIC18.76■□□□□ 0.59
Ddx58Q6Q899 Gm40123-201ENSMUST00000198175 1027 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Ddx58Q6Q899 Rxfp4-201ENSMUST00000063119 1245 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
Ddx58Q6Q899 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC18.76■□□□□ 0.59
Ddx58Q6Q899 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ddx58Q6Q899 Socs4-201ENSMUST00000065562 6877 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ddx58Q6Q899 Gps1-202ENSMUST00000116305 1827 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ddx58Q6Q899 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC18.76■□□□□ 0.59
Ddx58Q6Q899 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
Ddx58Q6Q899 Ripor2-205ENSMUST00000110384 5608 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ddx58Q6Q899 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
Ddx58Q6Q899 Map3k6-201ENSMUST00000030677 4334 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ddx58Q6Q899 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC18.75■□□□□ 0.59
Ddx58Q6Q899 Sec11a-201ENSMUST00000026818 1345 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ddx58Q6Q899 Srpx-203ENSMUST00000115544 1865 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ddx58Q6Q899 Trim63-201ENSMUST00000030638 1855 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Ddx58Q6Q899 Kdelc2-201ENSMUST00000037853 3642 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ddx58Q6Q899 Ccnyl1-202ENSMUST00000114077 3281 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Ddx58Q6Q899 1700010B13Rik-202ENSMUST00000189435 1549 ntTSL 3 BASIC18.75■□□□□ 0.59
Ddx58Q6Q899 Gm26889-201ENSMUST00000181523 2252 ntTSL 5 BASIC18.75■□□□□ 0.59
Ddx58Q6Q899 Stra8-201ENSMUST00000031876 1803 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ddx58Q6Q899 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC18.75■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 40.3 ms