Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC17.06■□□□□ 0.32
Usp49Q6P9L4 Dcaf13-201ENSMUST00000022909 1551 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usp49Q6P9L4 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usp49Q6P9L4 Gm28111-201ENSMUST00000187786 1393 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Usp49Q6P9L4 Tmod2-208ENSMUST00000215614 1921 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usp49Q6P9L4 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Usp49Q6P9L4 Eda-209ENSMUST00000113783 4930 ntTSL 5 BASIC17.06■□□□□ 0.32
Usp49Q6P9L4 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usp49Q6P9L4 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Usp49Q6P9L4 Tmem255b-201ENSMUST00000167071 1138 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Usp49Q6P9L4 Gm5253-201ENSMUST00000187104 1025 ntBASIC17.06■□□□□ 0.32
Usp49Q6P9L4 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC17.06■□□□□ 0.32
Usp49Q6P9L4 Gm9682-201ENSMUST00000197505 556 ntBASIC17.06■□□□□ 0.32
Usp49Q6P9L4 Shisa5-218ENSMUST00000200515 1005 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Usp49Q6P9L4 Ucn-202ENSMUST00000201184 499 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usp49Q6P9L4 Gm30437-201ENSMUST00000206086 1201 ntBASIC17.06■□□□□ 0.32
Usp49Q6P9L4 Gm20337-201ENSMUST00000219062 1118 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Usp49Q6P9L4 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC17.06■□□□□ 0.32
Usp49Q6P9L4 Il17b-201ENSMUST00000025471 692 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usp49Q6P9L4 Hist1h2ak-201ENSMUST00000074752 393 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
Usp49Q6P9L4 Fkbp4-201ENSMUST00000032508 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usp49Q6P9L4 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Usp49Q6P9L4 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Usp49Q6P9L4 Gprin1-201ENSMUST00000099506 4141 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usp49Q6P9L4 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC17.06■□□□□ 0.32
Usp49Q6P9L4 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usp49Q6P9L4 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usp49Q6P9L4 Slk-202ENSMUST00000051691 4239 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Usp49Q6P9L4 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Usp49Q6P9L4 Kcnip4-201ENSMUST00000087395 2366 ntTSL 5 BASIC17.06■□□□□ 0.32
Usp49Q6P9L4 Eva1c-203ENSMUST00000099548 1948 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Usp49Q6P9L4 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp49Q6P9L4 Hpse-201ENSMUST00000045617 3117 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp49Q6P9L4 4930429H19Rik-201ENSMUST00000205260 1818 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Usp49Q6P9L4 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp49Q6P9L4 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Usp49Q6P9L4 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Usp49Q6P9L4 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp49Q6P9L4 Celf4-206ENSMUST00000224553 1729 ntBASIC17.05■□□□□ 0.32
Usp49Q6P9L4 Zfp444-201ENSMUST00000054680 2467 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp49Q6P9L4 Pias2-201ENSMUST00000114776 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp49Q6P9L4 Scara3-201ENSMUST00000042046 3597 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp49Q6P9L4 Gm5421-201ENSMUST00000181698 2354 ntBASIC17.05■□□□□ 0.32
Usp49Q6P9L4 Gm11453-201ENSMUST00000117318 1007 ntBASIC17.05■□□□□ 0.32
Usp49Q6P9L4 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC17.05■□□□□ 0.32
Usp49Q6P9L4 Gm11467-201ENSMUST00000129407 674 ntTSL 3 BASIC17.05■□□□□ 0.32
Usp49Q6P9L4 1700108N11Rik-201ENSMUST00000153051 917 ntTSL 2 BASIC17.05■□□□□ 0.32
Usp49Q6P9L4 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp49Q6P9L4 Faap20-210ENSMUST00000178473 1076 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp49Q6P9L4 Gm6550-201ENSMUST00000187574 993 ntBASIC17.05■□□□□ 0.32
Usp49Q6P9L4 Gm37153-201ENSMUST00000193637 231 ntBASIC17.05■□□□□ 0.32
Usp49Q6P9L4 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp49Q6P9L4 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Usp49Q6P9L4 Sfxn5-202ENSMUST00000059034 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp49Q6P9L4 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
Usp49Q6P9L4 Trp53i11-201ENSMUST00000090554 2654 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp49Q6P9L4 Ttc13-210ENSMUST00000214828 3301 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Usp49Q6P9L4 Ren1-201ENSMUST00000094556 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp49Q6P9L4 Ddx20-201ENSMUST00000090680 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp49Q6P9L4 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp49Q6P9L4 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp49Q6P9L4 Lamp2-203ENSMUST00000074913 2184 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp49Q6P9L4 Pdzrn3-201ENSMUST00000075994 4104 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp49Q6P9L4 Tm4sf4-201ENSMUST00000029377 1496 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Usp49Q6P9L4 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC17.04■□□□□ 0.32
Usp49Q6P9L4 Ctnna2-204ENSMUST00000160894 4162 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Usp49Q6P9L4 Cab39-202ENSMUST00000113360 3805 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Usp49Q6P9L4 P2rx6-203ENSMUST00000171002 1353 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Usp49Q6P9L4 Narfl-201ENSMUST00000002350 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Usp49Q6P9L4 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
Usp49Q6P9L4 Poc1b-204ENSMUST00000159990 3449 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Usp49Q6P9L4 Dlgap4-204ENSMUST00000109566 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Usp49Q6P9L4 Fbxo17-205ENSMUST00000167118 861 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
Usp49Q6P9L4 Gm18489-201ENSMUST00000172565 551 ntBASIC17.04■□□□□ 0.32
Usp49Q6P9L4 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC17.04■□□□□ 0.32
Usp49Q6P9L4 AC161829.1-201ENSMUST00000220298 281 ntBASIC17.04■□□□□ 0.32
Usp49Q6P9L4 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC17.04■□□□□ 0.32
Usp49Q6P9L4 Mtus2-201ENSMUST00000071878 1211 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Usp49Q6P9L4 Slc35e2-201ENSMUST00000043829 2910 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Usp49Q6P9L4 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
Usp49Q6P9L4 Cndp2-202ENSMUST00000168419 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Usp49Q6P9L4 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC17.04■□□□□ 0.32
Usp49Q6P9L4 Sema3b-202ENSMUST00000102529 2875 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Usp49Q6P9L4 Zbtb33-202ENSMUST00000115142 2567 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Usp49Q6P9L4 Gm38318-201ENSMUST00000195769 1706 ntBASIC17.04■□□□□ 0.32
Usp49Q6P9L4 Smyd5-201ENSMUST00000045693 2486 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Usp49Q6P9L4 Fstl1-201ENSMUST00000114763 3789 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Usp49Q6P9L4 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
Usp49Q6P9L4 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Usp49Q6P9L4 Gstt2-201ENSMUST00000038257 1370 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Usp49Q6P9L4 Clcn2-201ENSMUST00000007207 3128 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Usp49Q6P9L4 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Usp49Q6P9L4 Micall2-201ENSMUST00000044642 3346 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Usp49Q6P9L4 Gtpbp3-201ENSMUST00000007754 2800 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Usp49Q6P9L4 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Usp49Q6P9L4 Ddc-210ENSMUST00000178704 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Usp49Q6P9L4 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Usp49Q6P9L4 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Usp49Q6P9L4 Asb10-203ENSMUST00000119657 1536 ntTSL 5 BASIC17.03■□□□□ 0.32
Usp49Q6P9L4 Tmem9-205ENSMUST00000165125 901 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 25.6 ms