Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 4930592C13Rik-201ENSMUST00000196791 661 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
Cux1P53564 Gm36236-201ENSMUST00000220780 701 ntTSL 3 BASIC23.18■■□□□ 1.3
Cux1P53564 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Cux1P53564 4930425O10Rik-201ENSMUST00000197761 1418 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
Cux1P53564 Elf3-202ENSMUST00000185752 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
Cux1P53564 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC23.17■■□□□ 1.3
Cux1P53564 Kcnj8-201ENSMUST00000032374 2269 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
Cux1P53564 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
Cux1P53564 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
Cux1P53564 Slco3a1-201ENSMUST00000026897 4589 ntAPPRIS P4 TSL 1 (best) BASIC23.17■■□□□ 1.3
Cux1P53564 Aph1a-202ENSMUST00000056710 1601 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Cux1P53564 AI413582-204ENSMUST00000154473 836 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Cux1P53564 Gm17344-202ENSMUST00000173980 621 ntTSL 5 BASIC23.17■■□□□ 1.3
Cux1P53564 H2afy2-201ENSMUST00000020283 2175 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Cux1P53564 Tdrd12-205ENSMUST00000205407 1412 ntTSL 5 BASIC23.17■■□□□ 1.3
Cux1P53564 0610005C13Rik-201ENSMUST00000209416 856 ntTSL 5 BASIC23.17■■□□□ 1.3
Cux1P53564 AC238811.1-201ENSMUST00000225302 441 ntBASIC23.17■■□□□ 1.3
Cux1P53564 Olfr160-203ENSMUST00000215727 1667 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
Cux1P53564 Haspin-201ENSMUST00000052140 2810 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
Cux1P53564 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
Cux1P53564 Cdk2-201ENSMUST00000026415 2240 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Cux1P53564 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
Cux1P53564 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
Cux1P53564 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC23.16■■□□□ 1.3
Cux1P53564 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Cux1P53564 Nap1l5-201ENSMUST00000059539 1844 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
Cux1P53564 Ctnnbip1-202ENSMUST00000105692 634 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Cux1P53564 Dnajc5-202ENSMUST00000108796 934 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
Cux1P53564 Rnd1-202ENSMUST00000109149 1034 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Cux1P53564 Pebp1-202ENSMUST00000111973 779 ntTSL 3 BASIC23.16■■□□□ 1.3
Cux1P53564 Gm12859-201ENSMUST00000117834 427 ntBASIC23.16■■□□□ 1.3
Cux1P53564 Gm14042-201ENSMUST00000120139 833 ntBASIC23.16■■□□□ 1.3
Cux1P53564 1700121C08Rik-201ENSMUST00000137546 677 ntTSL 3 BASIC23.16■■□□□ 1.3
Cux1P53564 Gm12352-201ENSMUST00000154452 760 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Cux1P53564 Msgn1-201ENSMUST00000049877 613 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
Cux1P53564 S100a7a-201ENSMUST00000079286 1280 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Cux1P53564 Gm6471-201ENSMUST00000097935 805 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Cux1P53564 Nf2-201ENSMUST00000053079 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Cux1P53564 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Cux1P53564 Nfyb-204ENSMUST00000130911 2554 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Cux1P53564 Lamp2-203ENSMUST00000074913 2184 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
Cux1P53564 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Cux1P53564 Ydjc-202ENSMUST00000115702 1713 ntTSL 5 BASIC23.16■■□□□ 1.3
Cux1P53564 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Cux1P53564 Slc25a47-201ENSMUST00000057026 1580 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Cux1P53564 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC23.15■■□□□ 1.3
Cux1P53564 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC23.15■■□□□ 1.3
Cux1P53564 BC037032-204ENSMUST00000155191 3291 ntTSL 5 BASIC23.15■■□□□ 1.3
Cux1P53564 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC23.15■■□□□ 1.3
Cux1P53564 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC23.15■■□□□ 1.3
Cux1P53564 Mir1897-201ENSMUST00000122581 272 ntBASIC23.15■■□□□ 1.3
Cux1P53564 AC159619.3-201ENSMUST00000222694 473 ntTSL 5 BASIC23.15■■□□□ 1.3
Cux1P53564 Treml1-204ENSMUST00000224001 1220 ntAPPRIS P2 BASIC23.15■■□□□ 1.3
Cux1P53564 Cyp4f18-201ENSMUST00000003574 1702 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Cux1P53564 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
Cux1P53564 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC23.15■■□□□ 1.3
Cux1P53564 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Cux1P53564 Jakmip3-201ENSMUST00000106111 1571 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
Cux1P53564 Ppef2-201ENSMUST00000031359 2274 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Cux1P53564 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Cux1P53564 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Cux1P53564 AC163637.1-201ENSMUST00000215491 1894 ntBASIC23.14■■□□□ 1.3
Cux1P53564 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
Cux1P53564 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
Cux1P53564 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.3
Cux1P53564 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC23.14■■□□□ 1.3
Cux1P53564 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
Cux1P53564 Disp2-204ENSMUST00000110846 1732 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
Cux1P53564 Bola2-202ENSMUST00000106369 642 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
Cux1P53564 Tpd52-206ENSMUST00000121038 849 ntTSL 5 BASIC23.14■■□□□ 1.3
Cux1P53564 B9d2-202ENSMUST00000205325 593 ntTSL 2 BASIC23.14■■□□□ 1.3
Cux1P53564 Gm45098-201ENSMUST00000207179 657 ntBASIC23.14■■□□□ 1.3
Cux1P53564 Ggn-201ENSMUST00000033886 588 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
Cux1P53564 Phgr1-201ENSMUST00000061360 538 ntAPPRIS ALT2 TSL 5 BASIC23.14■■□□□ 1.3
Cux1P53564 Tmem107-202ENSMUST00000094081 1263 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
Cux1P53564 Mxra8os-201ENSMUST00000097740 687 ntBASIC23.14■■□□□ 1.3
Cux1P53564 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC23.14■■□□□ 1.3
Cux1P53564 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Cux1P53564 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Cux1P53564 Prkg1-206ENSMUST00000182685 1628 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
Cux1P53564 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC23.14■■□□□ 1.29
Cux1P53564 Keap1-201ENSMUST00000049567 3172 ntAPPRIS P2 TSL 1 (best) BASIC23.14■■□□□ 1.29
Cux1P53564 Wdr45b-201ENSMUST00000026173 2321 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Cux1P53564 Rgs19-204ENSMUST00000108772 779 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
Cux1P53564 Gm4204-201ENSMUST00000110798 1231 ntBASIC23.13■■□□□ 1.29
Cux1P53564 Gm27631-201ENSMUST00000184163 466 ntBASIC23.13■■□□□ 1.29
Cux1P53564 Mpv17-207ENSMUST00000201491 923 ntTSL 2 BASIC23.13■■□□□ 1.29
Cux1P53564 Hsd17b14-205ENSMUST00000210300 797 ntTSL 5 BASIC23.13■■□□□ 1.29
Cux1P53564 Prrg2-207ENSMUST00000210500 922 ntAPPRIS ALT2 TSL 5 BASIC23.13■■□□□ 1.29
Cux1P53564 Tspan3-203ENSMUST00000215906 842 ntTSL 3 BASIC23.13■■□□□ 1.29
Cux1P53564 Tubb3-201ENSMUST00000071134 1868 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Cux1P53564 Rft1-201ENSMUST00000064230 2387 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Cux1P53564 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC23.13■■□□□ 1.29
Cux1P53564 Dcakd-201ENSMUST00000021313 1744 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Cux1P53564 Wac-201ENSMUST00000074919 3070 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
Cux1P53564 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Cux1P53564 Rpl17-ps10-201ENSMUST00000119383 555 ntBASIC23.13■■□□□ 1.29
Cux1P53564 Rpl17-ps9-201ENSMUST00000119541 555 ntBASIC23.13■■□□□ 1.29
Cux1P53564 Rpl17-ps4-201ENSMUST00000120241 555 ntBASIC23.13■■□□□ 1.29
Cux1P53564 Ggn-205ENSMUST00000209019 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
Retrieved 100 of 76,532 protein–RNA pairs in 45.1 ms