Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Gm6583-201ENSMUST00000051117 2233 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
Scn11aQ9R053 Rnf25-202ENSMUST00000113721 1451 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Scn11aQ9R053 Stra8-203ENSMUST00000114999 1455 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Scn11aQ9R053 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Scn11aQ9R053 Zfp444-201ENSMUST00000054680 2467 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Scn11aQ9R053 Kcnj6-202ENSMUST00000099508 3086 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Scn11aQ9R053 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Scn11aQ9R053 Ggt6-203ENSMUST00000108499 874 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Scn11aQ9R053 Panct2-202ENSMUST00000188631 625 ntTSL 3 BASIC17.92■□□□□ 0.46
Scn11aQ9R053 AC151828.1-201ENSMUST00000219552 661 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Scn11aQ9R053 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Scn11aQ9R053 Cbfb-203ENSMUST00000109394 2487 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Scn11aQ9R053 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Scn11aQ9R053 Acot10-201ENSMUST00000052910 1537 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
Scn11aQ9R053 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Scn11aQ9R053 Prob1-201ENSMUST00000097619 3021 ntBASIC17.92■□□□□ 0.46
Scn11aQ9R053 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Scn11aQ9R053 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Scn11aQ9R053 Cox16-201ENSMUST00000002757 2007 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Scn11aQ9R053 Leprotl1-201ENSMUST00000033910 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Scn11aQ9R053 Gm16845-201ENSMUST00000180419 1415 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Scn11aQ9R053 Edem2-201ENSMUST00000040833 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Scn11aQ9R053 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Scn11aQ9R053 Serf2-204ENSMUST00000139253 3056 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Scn11aQ9R053 8430429K09Rik-204ENSMUST00000146456 1675 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Scn11aQ9R053 Mindy4-203ENSMUST00000204842 2211 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Scn11aQ9R053 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
Scn11aQ9R053 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Scn11aQ9R053 Tnfrsf1a-201ENSMUST00000032491 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Scn11aQ9R053 Cpxm1-201ENSMUST00000028897 2366 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Scn11aQ9R053 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Scn11aQ9R053 Hoga1-204ENSMUST00000172244 631 ntTSL 5 BASIC17.91■□□□□ 0.46
Scn11aQ9R053 Gltpd2-202ENSMUST00000179000 794 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
Scn11aQ9R053 Asb1-205ENSMUST00000188081 1272 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Scn11aQ9R053 Asb1-206ENSMUST00000188879 1299 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Scn11aQ9R053 Gm38293-201ENSMUST00000193209 600 ntTSL 2 BASIC17.91■□□□□ 0.46
Scn11aQ9R053 Gm4559-201ENSMUST00000080669 600 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
Scn11aQ9R053 Krt42-201ENSMUST00000017270 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Scn11aQ9R053 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC17.91■□□□□ 0.46
Scn11aQ9R053 Rhpn1-201ENSMUST00000023244 1932 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
Scn11aQ9R053 Sec24a-202ENSMUST00000064297 2104 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Scn11aQ9R053 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Scn11aQ9R053 Aph1a-202ENSMUST00000056710 1601 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Scn11aQ9R053 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Scn11aQ9R053 Mtmr7-202ENSMUST00000048898 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Scn11aQ9R053 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Scn11aQ9R053 Nr2f1-202ENSMUST00000125176 841 ntTSL 5 BASIC17.91■□□□□ 0.46
Scn11aQ9R053 Unkl-205ENSMUST00000161679 1053 ntTSL 5 BASIC17.91■□□□□ 0.46
Scn11aQ9R053 Gm5819-201ENSMUST00000171469 465 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
Scn11aQ9R053 Mir7684-201ENSMUST00000183858 60 ntBASIC17.91■□□□□ 0.46
Scn11aQ9R053 Gm18187-201ENSMUST00000196476 984 ntBASIC17.91■□□□□ 0.46
Scn11aQ9R053 Treml1-204ENSMUST00000224001 1220 ntAPPRIS P2 BASIC17.91■□□□□ 0.46
Scn11aQ9R053 Sergef-201ENSMUST00000033127 1465 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Scn11aQ9R053 Slc2a6-202ENSMUST00000102890 1887 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Scn11aQ9R053 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Scn11aQ9R053 Zscan12-202ENSMUST00000099720 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Scn11aQ9R053 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Scn11aQ9R053 Pias2-201ENSMUST00000114776 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Scn11aQ9R053 Kctd15-203ENSMUST00000108070 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Scn11aQ9R053 Gm17396-201ENSMUST00000172075 1655 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Scn11aQ9R053 Cradd-201ENSMUST00000053594 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Scn11aQ9R053 Prkag2-203ENSMUST00000114975 2205 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Scn11aQ9R053 Rab11fip4os2-201ENSMUST00000123067 689 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Scn11aQ9R053 Gm37667-201ENSMUST00000193103 752 ntTSL 5 BASIC17.9■□□□□ 0.46
Scn11aQ9R053 AC087891.2-201ENSMUST00000219293 658 ntTSL 5 BASIC17.9■□□□□ 0.46
Scn11aQ9R053 Oas1a-201ENSMUST00000080322 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Scn11aQ9R053 Chst8-204ENSMUST00000205259 1980 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.46
Scn11aQ9R053 Hpcal4-202ENSMUST00000106246 1627 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.46
Scn11aQ9R053 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.46
Scn11aQ9R053 Rgs19-204ENSMUST00000108772 779 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Scn11aQ9R053 Gm7488-201ENSMUST00000117148 684 ntBASIC17.89■□□□□ 0.45
Scn11aQ9R053 Gm12264-201ENSMUST00000123949 500 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Scn11aQ9R053 Serpina16-201ENSMUST00000095451 1257 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
Scn11aQ9R053 Fam219b-202ENSMUST00000114200 3017 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Scn11aQ9R053 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Scn11aQ9R053 Sync-201ENSMUST00000102599 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Scn11aQ9R053 Lamp2-203ENSMUST00000074913 2184 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Scn11aQ9R053 Lrwd1-201ENSMUST00000006301 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Scn11aQ9R053 Mindy1-212ENSMUST00000168223 1812 ntTSL 5 BASIC17.89■□□□□ 0.45
Scn11aQ9R053 Insig1-201ENSMUST00000059155 2697 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Scn11aQ9R053 Siglecf-201ENSMUST00000012798 2510 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
Scn11aQ9R053 Gm42466-201ENSMUST00000202099 1301 ntBASIC17.89■□□□□ 0.45
Scn11aQ9R053 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Scn11aQ9R053 Rpl34-203ENSMUST00000133802 711 ntTSL 2 BASIC17.89■□□□□ 0.45
Scn11aQ9R053 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC17.89■□□□□ 0.45
Scn11aQ9R053 Gm9794-201ENSMUST00000202370 423 ntBASIC17.89■□□□□ 0.45
Scn11aQ9R053 Aip-201ENSMUST00000025767 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Scn11aQ9R053 Atf3-201ENSMUST00000027941 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Scn11aQ9R053 Actg1-204ENSMUST00000106215 1827 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Scn11aQ9R053 Rbfox2-209ENSMUST00000228087 1694 ntAPPRIS ALT2 BASIC17.89■□□□□ 0.45
Scn11aQ9R053 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Scn11aQ9R053 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Scn11aQ9R053 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Scn11aQ9R053 Ccdc106-202ENSMUST00000108571 1318 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Scn11aQ9R053 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Scn11aQ9R053 Gale-202ENSMUST00000102541 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Scn11aQ9R053 H60b-201ENSMUST00000105522 1029 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Scn11aQ9R053 Ccdc169-203ENSMUST00000118963 740 ntTSL 3 BASIC17.88■□□□□ 0.45
Scn11aQ9R053 Gm18049-201ENSMUST00000208909 581 ntBASIC17.88■□□□□ 0.45
Scn11aQ9R053 Vsig2-204ENSMUST00000215271 891 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 28.9 ms