Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 AL645783.1-201ENSMUST00000221416 1832 ntBASIC20.59■□□□□ 0.89
Scn4aQ9ER60 Krt14-201ENSMUST00000007272 1698 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Scn4aQ9ER60 Rhog-202ENSMUST00000106923 1321 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
Scn4aQ9ER60 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC20.58■□□□□ 0.89
Scn4aQ9ER60 Gm26878-201ENSMUST00000181778 1644 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Scn4aQ9ER60 Rnf167-201ENSMUST00000037534 1833 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Scn4aQ9ER60 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Scn4aQ9ER60 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Scn4aQ9ER60 Gm16282-201ENSMUST00000162641 451 ntTSL 3 BASIC20.58■□□□□ 0.89
Scn4aQ9ER60 Gm43758-201ENSMUST00000199500 367 ntBASIC20.58■□□□□ 0.89
Scn4aQ9ER60 Gm6916-202ENSMUST00000205523 195 ntBASIC20.58■□□□□ 0.89
Scn4aQ9ER60 Gm45098-201ENSMUST00000207179 657 ntBASIC20.58■□□□□ 0.89
Scn4aQ9ER60 Gm45720-201ENSMUST00000211881 484 ntTSL 3 BASIC20.58■□□□□ 0.89
Scn4aQ9ER60 B230118H07Rik-202ENSMUST00000099682 895 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
Scn4aQ9ER60 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Scn4aQ9ER60 Hist1h1e-201ENSMUST00000062045 1930 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
Scn4aQ9ER60 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
Scn4aQ9ER60 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Scn4aQ9ER60 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Scn4aQ9ER60 Gm14662-201ENSMUST00000145552 734 ntTSL 3 BASIC20.57■□□□□ 0.88
Scn4aQ9ER60 2900092O11Rik-201ENSMUST00000191770 755 ntBASIC20.57■□□□□ 0.88
Scn4aQ9ER60 Gm20083-202ENSMUST00000206663 1008 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Scn4aQ9ER60 Gm45930-201ENSMUST00000221330 292 ntBASIC20.57■□□□□ 0.88
Scn4aQ9ER60 Olfr54-201ENSMUST00000072152 942 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
Scn4aQ9ER60 Olfr1375-201ENSMUST00000073543 942 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
Scn4aQ9ER60 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Scn4aQ9ER60 Gm5763-201ENSMUST00000155951 1530 ntBASIC20.57■□□□□ 0.88
Scn4aQ9ER60 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Scn4aQ9ER60 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC20.57■□□□□ 0.88
Scn4aQ9ER60 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
Scn4aQ9ER60 Gm17315-201ENSMUST00000181408 2504 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Scn4aQ9ER60 Ifi47-204ENSMUST00000213728 1678 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Scn4aQ9ER60 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Scn4aQ9ER60 Gpr18-201ENSMUST00000055475 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Scn4aQ9ER60 Allc-202ENSMUST00000110917 1384 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Scn4aQ9ER60 Tmod4-202ENSMUST00000107227 1260 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Scn4aQ9ER60 Arfrp1-202ENSMUST00000108808 1133 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Scn4aQ9ER60 Gm11814-201ENSMUST00000119515 929 ntBASIC20.57■□□□□ 0.88
Scn4aQ9ER60 Fundc1-204ENSMUST00000176638 448 ntTSL 3 BASIC20.57■□□□□ 0.88
Scn4aQ9ER60 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
Scn4aQ9ER60 AC134335.2-201ENSMUST00000227660 440 ntBASIC20.57■□□□□ 0.88
Scn4aQ9ER60 Gm8973-201ENSMUST00000079818 315 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
Scn4aQ9ER60 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Scn4aQ9ER60 Lrrc42-201ENSMUST00000030360 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Scn4aQ9ER60 Klhdc4-210ENSMUST00000174717 1662 ntTSL 5 BASIC20.56■□□□□ 0.88
Scn4aQ9ER60 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Scn4aQ9ER60 Fbxw2-205ENSMUST00000113078 1872 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Scn4aQ9ER60 Oprm1-229ENSMUST00000152674 1179 ntTSL 3 BASIC20.56■□□□□ 0.88
Scn4aQ9ER60 Gm17344-201ENSMUST00000171173 1159 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Scn4aQ9ER60 Gm8565-201ENSMUST00000183259 1014 ntBASIC20.56■□□□□ 0.88
Scn4aQ9ER60 Gm27516-201ENSMUST00000184237 98 ntBASIC20.56■□□□□ 0.88
Scn4aQ9ER60 Gm29237-201ENSMUST00000186216 448 ntTSL 5 BASIC20.56■□□□□ 0.88
Scn4aQ9ER60 1700030C10Rik-202ENSMUST00000186243 126 ntBASIC20.56■□□□□ 0.88
Scn4aQ9ER60 Gm7783-201ENSMUST00000204795 781 ntBASIC20.56■□□□□ 0.88
Scn4aQ9ER60 Mob2-206ENSMUST00000211206 2140 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Scn4aQ9ER60 Gm38327-201ENSMUST00000195852 1755 ntBASIC20.56■□□□□ 0.88
Scn4aQ9ER60 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Scn4aQ9ER60 Rab18-201ENSMUST00000097680 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Scn4aQ9ER60 4921504A21Rik-201ENSMUST00000180594 2156 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Scn4aQ9ER60 4933436I20Rik-202ENSMUST00000190615 1509 ntTSL 5 BASIC20.55■□□□□ 0.88
Scn4aQ9ER60 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Scn4aQ9ER60 Gm12585-201ENSMUST00000117307 290 ntBASIC20.55■□□□□ 0.88
Scn4aQ9ER60 Pdlim2-204ENSMUST00000127836 920 ntTSL 5 BASIC20.55■□□□□ 0.88
Scn4aQ9ER60 Armc2-208ENSMUST00000162405 1135 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Scn4aQ9ER60 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC20.55■□□□□ 0.88
Scn4aQ9ER60 Neat1-203ENSMUST00000174829 1030 ntTSL 5 BASIC20.55■□□□□ 0.88
Scn4aQ9ER60 AC125117.1-201ENSMUST00000228121 468 ntBASIC20.55■□□□□ 0.88
Scn4aQ9ER60 Tpd52-204ENSMUST00000094381 1074 ntTSL 3 BASIC20.55■□□□□ 0.88
Scn4aQ9ER60 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC20.55■□□□□ 0.88
Scn4aQ9ER60 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Scn4aQ9ER60 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC20.55■□□□□ 0.88
Scn4aQ9ER60 Dmkn-204ENSMUST00000085691 2007 ntAPPRIS P4 TSL 1 (best) BASIC20.55■□□□□ 0.88
Scn4aQ9ER60 A330074K22Rik-201ENSMUST00000183235 2489 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Scn4aQ9ER60 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Scn4aQ9ER60 Tmem53-202ENSMUST00000106433 913 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Scn4aQ9ER60 Gm11684-201ENSMUST00000144975 757 ntTSL 5 BASIC20.55■□□□□ 0.88
Scn4aQ9ER60 Arf5-202ENSMUST00000169841 768 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Scn4aQ9ER60 Tmem205-203ENSMUST00000213698 705 ntAPPRIS P1 TSL 3 BASIC20.55■□□□□ 0.88
Scn4aQ9ER60 Tas2r137-201ENSMUST00000064932 1073 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
Scn4aQ9ER60 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
Scn4aQ9ER60 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Scn4aQ9ER60 Rabggta-202ENSMUST00000163889 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Scn4aQ9ER60 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC20.54■□□□□ 0.88
Scn4aQ9ER60 Gm22018-201ENSMUST00000104357 131 ntBASIC20.54■□□□□ 0.88
Scn4aQ9ER60 Gm20404-201ENSMUST00000174032 621 ntTSL 3 BASIC20.54■□□□□ 0.88
Scn4aQ9ER60 Gm33320-201ENSMUST00000192232 530 ntBASIC20.54■□□□□ 0.88
Scn4aQ9ER60 Gm19184-201ENSMUST00000196798 928 ntBASIC20.54■□□□□ 0.88
Scn4aQ9ER60 Dera-204ENSMUST00000203216 688 ntTSL 5 BASIC20.54■□□□□ 0.88
Scn4aQ9ER60 AC166574.6-201ENSMUST00000227889 1806 ntBASIC20.54■□□□□ 0.88
Scn4aQ9ER60 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Scn4aQ9ER60 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Scn4aQ9ER60 Fbxo25-201ENSMUST00000043520 2012 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
Scn4aQ9ER60 Taldo1-204ENSMUST00000211654 1362 ntTSL 5 BASIC20.54■□□□□ 0.88
Scn4aQ9ER60 Rhpn1-201ENSMUST00000023244 1932 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
Scn4aQ9ER60 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Scn4aQ9ER60 Fhl2-202ENSMUST00000185893 1421 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Scn4aQ9ER60 Naa60-209ENSMUST00000175809 279 ntTSL 5 BASIC20.53■□□□□ 0.88
Scn4aQ9ER60 Tac2-202ENSMUST00000179960 852 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Scn4aQ9ER60 Gm45505-201ENSMUST00000210252 948 ntTSL 5 BASIC20.53■□□□□ 0.88
Scn4aQ9ER60 Tac2-201ENSMUST00000026466 678 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 38 ms