Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Dock4-201ENSMUST00000037488 8552 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Smc1aQ9CU62 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Smc1aQ9CU62 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Smc1aQ9CU62 Csad-201ENSMUST00000023805 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Smc1aQ9CU62 Slc35e2-201ENSMUST00000043829 2910 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Smc1aQ9CU62 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Smc1aQ9CU62 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Smc1aQ9CU62 Rtn4-201ENSMUST00000060992 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Smc1aQ9CU62 Dpysl3-204ENSMUST00000121805 5484 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Smc1aQ9CU62 Frmd5-207ENSMUST00000138157 4230 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Smc1aQ9CU62 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Smc1aQ9CU62 Lipo3-202ENSMUST00000112508 2839 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Smc1aQ9CU62 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Smc1aQ9CU62 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Smc1aQ9CU62 Sirpa-213ENSMUST00000163034 677 ntTSL 3 BASIC17.1■□□□□ 0.33
Smc1aQ9CU62 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC17.1■□□□□ 0.33
Smc1aQ9CU62 Ccnd3-208ENSMUST00000182539 931 ntTSL 2 BASIC17.1■□□□□ 0.33
Smc1aQ9CU62 Gm7507-201ENSMUST00000183053 1008 ntBASIC17.1■□□□□ 0.33
Smc1aQ9CU62 Gm5264-201ENSMUST00000190584 848 ntBASIC17.1■□□□□ 0.33
Smc1aQ9CU62 Rbpms-202ENSMUST00000033995 1039 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Smc1aQ9CU62 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Smc1aQ9CU62 Islr2-205ENSMUST00000170421 4071 ntAPPRIS P3 TSL 3 BASIC17.1■□□□□ 0.33
Smc1aQ9CU62 Dohh-201ENSMUST00000072751 1444 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Smc1aQ9CU62 Clec16a-204ENSMUST00000115824 6244 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Smc1aQ9CU62 Clec16a-202ENSMUST00000066345 6244 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
Smc1aQ9CU62 Fzd6-202ENSMUST00000179165 4325 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Smc1aQ9CU62 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Smc1aQ9CU62 Gnas-211ENSMUST00000109096 2465 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Smc1aQ9CU62 Gm26578-201ENSMUST00000181702 4611 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Smc1aQ9CU62 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Smc1aQ9CU62 Nkain2-203ENSMUST00000191234 3760 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Smc1aQ9CU62 Tulp3-201ENSMUST00000001562 3374 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Smc1aQ9CU62 Zbtb46-205ENSMUST00000180222 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Smc1aQ9CU62 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Smc1aQ9CU62 Ppp2r1a-201ENSMUST00000007708 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Smc1aQ9CU62 Slc43a3-201ENSMUST00000090726 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Smc1aQ9CU62 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Smc1aQ9CU62 Gm11779-201ENSMUST00000118541 368 ntBASIC17.09■□□□□ 0.33
Smc1aQ9CU62 Gm11750-201ENSMUST00000146016 583 ntTSL 5 BASIC17.09■□□□□ 0.33
Smc1aQ9CU62 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC17.09■□□□□ 0.33
Smc1aQ9CU62 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC17.09■□□□□ 0.33
Smc1aQ9CU62 Psmb5-202ENSMUST00000227257 622 ntBASIC17.09■□□□□ 0.33
Smc1aQ9CU62 AC159093.1-201ENSMUST00000227779 380 ntBASIC17.09■□□□□ 0.33
Smc1aQ9CU62 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Smc1aQ9CU62 6030408B16Rik-201ENSMUST00000071328 1155 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
Smc1aQ9CU62 Aurkaip1-201ENSMUST00000084097 1159 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Smc1aQ9CU62 Psma5-201ENSMUST00000090569 1239 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Smc1aQ9CU62 Papd5-202ENSMUST00000118952 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Smc1aQ9CU62 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Smc1aQ9CU62 Gm9889-202ENSMUST00000206983 1577 ntBASIC17.09■□□□□ 0.33
Smc1aQ9CU62 Kcnq2-217ENSMUST00000149964 8209 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Smc1aQ9CU62 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Smc1aQ9CU62 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Smc1aQ9CU62 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Smc1aQ9CU62 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Smc1aQ9CU62 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Smc1aQ9CU62 F2-201ENSMUST00000028681 1988 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Smc1aQ9CU62 Kif21a-201ENSMUST00000067205 6307 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Smc1aQ9CU62 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Smc1aQ9CU62 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC17.09■□□□□ 0.33
Smc1aQ9CU62 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Smc1aQ9CU62 Unc5d-203ENSMUST00000210298 3060 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Smc1aQ9CU62 Unc5d-205ENSMUST00000211448 3087 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Smc1aQ9CU62 Tbc1d22b-201ENSMUST00000048677 3592 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Smc1aQ9CU62 Brd7-201ENSMUST00000034085 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Smc1aQ9CU62 Pcyt1a-202ENSMUST00000104893 4951 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
Smc1aQ9CU62 Rtn1-202ENSMUST00000078505 3629 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Smc1aQ9CU62 Tmem184b-201ENSMUST00000074991 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Smc1aQ9CU62 9130017K11Rik-202ENSMUST00000135670 3338 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Smc1aQ9CU62 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Smc1aQ9CU62 Olah-203ENSMUST00000194918 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Smc1aQ9CU62 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Smc1aQ9CU62 Fbxo30-202ENSMUST00000129456 5060 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Smc1aQ9CU62 Slc4a7-201ENSMUST00000057015 8132 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Smc1aQ9CU62 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Smc1aQ9CU62 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Smc1aQ9CU62 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Smc1aQ9CU62 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Smc1aQ9CU62 Ndufb9-201ENSMUST00000022980 704 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Smc1aQ9CU62 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Smc1aQ9CU62 Adgrb2-208ENSMUST00000121049 4871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Smc1aQ9CU62 Rexo4-202ENSMUST00000114020 2278 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Smc1aQ9CU62 Cgn-203ENSMUST00000153263 2210 ntTSL 2 BASIC17.08■□□□□ 0.32
Smc1aQ9CU62 Lrrc56-201ENSMUST00000047093 2197 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
Smc1aQ9CU62 Tor1aip1-201ENSMUST00000027738 1952 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
Smc1aQ9CU62 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Smc1aQ9CU62 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Smc1aQ9CU62 Edem3-202ENSMUST00000187951 3115 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Smc1aQ9CU62 Kdm4b-202ENSMUST00000086835 4360 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Smc1aQ9CU62 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Smc1aQ9CU62 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC17.07■□□□□ 0.32
Smc1aQ9CU62 Miga1-202ENSMUST00000073089 4965 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Smc1aQ9CU62 Dzip3-201ENSMUST00000114516 3331 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Smc1aQ9CU62 Prmt6-203ENSMUST00000190378 3051 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Smc1aQ9CU62 Senp6-202ENSMUST00000164859 3853 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Smc1aQ9CU62 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Smc1aQ9CU62 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
Smc1aQ9CU62 Gm15467-201ENSMUST00000120582 445 ntBASIC17.07■□□□□ 0.32
Smc1aQ9CU62 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Smc1aQ9CU62 Nat8b-ps-201ENSMUST00000162660 699 ntBASIC17.07■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 25.5 ms