Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Nr1h2-203ENSMUST00000107911 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
ShhQ62226 Mphosph8-201ENSMUST00000116468 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
ShhQ62226 Stk33-203ENSMUST00000121378 1304 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
ShhQ62226 Idh2-201ENSMUST00000107384 1745 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
ShhQ62226 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
ShhQ62226 Asphd1-202ENSMUST00000106339 518 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
ShhQ62226 Gm4459-201ENSMUST00000118750 468 ntBASIC14.25□□□□□ -0.13
ShhQ62226 Ndufa1-201ENSMUST00000016571 419 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
ShhQ62226 Rhox2a-202ENSMUST00000173650 735 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
ShhQ62226 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC14.25□□□□□ -0.13
ShhQ62226 Rhox2c-204ENSMUST00000184688 720 ntTSL 5 BASIC14.25□□□□□ -0.13
ShhQ62226 Nckipsd-206ENSMUST00000195323 467 ntTSL 3 BASIC14.25□□□□□ -0.13
ShhQ62226 Gm34397-203ENSMUST00000214991 630 ntTSL 5 BASIC14.25□□□□□ -0.13
ShhQ62226 Ndufv3-202ENSMUST00000064798 485 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
ShhQ62226 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
ShhQ62226 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
ShhQ62226 Gm45212-201ENSMUST00000205831 3403 ntBASIC14.25□□□□□ -0.13
ShhQ62226 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC14.25□□□□□ -0.13
ShhQ62226 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
ShhQ62226 Igdcc4-202ENSMUST00000077696 6361 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
ShhQ62226 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
ShhQ62226 Osbpl1a-206ENSMUST00000121774 2931 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
ShhQ62226 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
ShhQ62226 C2cd2l-206ENSMUST00000214602 2808 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
ShhQ62226 Elmo2-202ENSMUST00000074046 3502 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
ShhQ62226 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
ShhQ62226 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
ShhQ62226 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
ShhQ62226 Wdr91-201ENSMUST00000081214 2682 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
ShhQ62226 Cstf2-203ENSMUST00000113287 3661 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
ShhQ62226 1700029J07Rik-202ENSMUST00000098786 1340 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
ShhQ62226 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
ShhQ62226 Nap1l4-201ENSMUST00000072727 2285 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
ShhQ62226 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
ShhQ62226 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC14.24□□□□□ -0.13
ShhQ62226 Psma6-204ENSMUST00000163070 787 ntTSL 5 BASIC14.24□□□□□ -0.13
ShhQ62226 AC139382.1-201ENSMUST00000221402 498 ntBASIC14.24□□□□□ -0.13
ShhQ62226 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC14.24□□□□□ -0.13
ShhQ62226 Smdt1-201ENSMUST00000023086 705 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
ShhQ62226 Gm8396-201ENSMUST00000057361 823 ntBASIC14.24□□□□□ -0.13
ShhQ62226 Crb3-201ENSMUST00000071826 1194 ntAPPRIS P3 TSL 3 BASIC14.24□□□□□ -0.13
ShhQ62226 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
ShhQ62226 Olfr1410-201ENSMUST00000079790 969 ntTSL 5 BASIC14.24□□□□□ -0.13
ShhQ62226 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
ShhQ62226 Dlg5-202ENSMUST00000073687 7784 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
ShhQ62226 Gadd45gip1-201ENSMUST00000036734 2494 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
ShhQ62226 Kmt5c-202ENSMUST00000108582 2774 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
ShhQ62226 Kcnj6-202ENSMUST00000099508 3086 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
ShhQ62226 Acaa2-201ENSMUST00000041053 1515 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
ShhQ62226 Gdpd2-202ENSMUST00000113744 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
ShhQ62226 Skor1-203ENSMUST00000119146 3610 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
ShhQ62226 Lrrc56-203ENSMUST00000084446 2390 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
ShhQ62226 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC14.24□□□□□ -0.13
ShhQ62226 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
ShhQ62226 Pcbp3-206ENSMUST00000168465 1748 ntAPPRIS P3 TSL 5 BASIC14.24□□□□□ -0.13
ShhQ62226 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
ShhQ62226 Rapsn-201ENSMUST00000050323 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
ShhQ62226 Slc8b1-202ENSMUST00000076051 2661 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
ShhQ62226 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
ShhQ62226 Scamp1-201ENSMUST00000022197 4259 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
ShhQ62226 Acox1-201ENSMUST00000066587 3987 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
ShhQ62226 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
ShhQ62226 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC14.23□□□□□ -0.13
ShhQ62226 Haus3-201ENSMUST00000060049 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
ShhQ62226 Tsc22d1-208ENSMUST00000142683 797 ntTSL 3 BASIC14.23□□□□□ -0.13
ShhQ62226 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC14.23□□□□□ -0.13
ShhQ62226 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC14.23□□□□□ -0.13
ShhQ62226 Tspan18-201ENSMUST00000028646 1203 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
ShhQ62226 Timm10b-201ENSMUST00000058333 694 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
ShhQ62226 Klk15-201ENSMUST00000068625 845 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
ShhQ62226 Olfr541-201ENSMUST00000080681 1103 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
ShhQ62226 Sumo1-201ENSMUST00000091374 1215 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
ShhQ62226 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
ShhQ62226 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
ShhQ62226 Agbl5-202ENSMUST00000114700 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
ShhQ62226 App-203ENSMUST00000226801 3299 ntAPPRIS ALT2 BASIC14.23□□□□□ -0.13
ShhQ62226 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
ShhQ62226 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
ShhQ62226 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
ShhQ62226 G2e3-202ENSMUST00000119211 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
ShhQ62226 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
ShhQ62226 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
ShhQ62226 Tatdn2-205ENSMUST00000204753 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
ShhQ62226 Hs3st5-201ENSMUST00000058738 3078 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
ShhQ62226 Nrip2-201ENSMUST00000001561 1893 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
ShhQ62226 Fubp3-202ENSMUST00000113482 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
ShhQ62226 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
ShhQ62226 Esrp1-202ENSMUST00000108310 2781 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
ShhQ62226 Sh2d4a-201ENSMUST00000066594 2718 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
ShhQ62226 Sik2-201ENSMUST00000041375 3552 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
ShhQ62226 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
ShhQ62226 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
ShhQ62226 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC14.22□□□□□ -0.13
ShhQ62226 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
ShhQ62226 Ptpa-201ENSMUST00000042055 2586 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
ShhQ62226 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
ShhQ62226 Fam53b-204ENSMUST00000106165 1232 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
ShhQ62226 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
ShhQ62226 Sfxn5-203ENSMUST00000113787 638 ntTSL 2 BASIC14.22□□□□□ -0.13
ShhQ62226 Rpl36-ps8-201ENSMUST00000121187 315 ntBASIC14.22□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 30.8 ms