Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Trhde-201ENSMUST00000061632 5714 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Usp28Q5I043 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Usp28Q5I043 Bcor-203ENSMUST00000115512 6887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Usp28Q5I043 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Usp28Q5I043 Sema4c-203ENSMUST00000191677 3779 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
Usp28Q5I043 Slc6a17-208ENSMUST00000169449 6322 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Usp28Q5I043 Slc6a17-201ENSMUST00000029499 6308 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Usp28Q5I043 1700028B04Rik-202ENSMUST00000190841 971 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Usp28Q5I043 Gm19710-202ENSMUST00000200320 493 ntTSL 3 BASIC17.36■□□□□ 0.37
Usp28Q5I043 AC160338.1-201ENSMUST00000214232 705 ntBASIC17.36■□□□□ 0.37
Usp28Q5I043 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Usp28Q5I043 Endov-203ENSMUST00000106245 5126 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Usp28Q5I043 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Usp28Q5I043 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC17.36■□□□□ 0.37
Usp28Q5I043 Mospd2-201ENSMUST00000004715 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Usp28Q5I043 Gm34419-201ENSMUST00000211383 1387 ntTSL 5 BASIC17.36■□□□□ 0.37
Usp28Q5I043 Tmpo-202ENSMUST00000072239 3533 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Usp28Q5I043 Csgalnact2-201ENSMUST00000049344 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Usp28Q5I043 Aldh1a3-203ENSMUST00000174209 1496 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Usp28Q5I043 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
Usp28Q5I043 Slmap-212ENSMUST00000139075 4508 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Usp28Q5I043 Msi1-208ENSMUST00000150779 3133 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Usp28Q5I043 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Usp28Q5I043 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Usp28Q5I043 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Usp28Q5I043 Zmym3-206ENSMUST00000120107 5882 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
Usp28Q5I043 Mrpl58-203ENSMUST00000106539 2522 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Usp28Q5I043 Dek-201ENSMUST00000021807 2556 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Usp28Q5I043 Mocs1-201ENSMUST00000024797 2646 ntTSL 5 BASIC17.35■□□□□ 0.37
Usp28Q5I043 Rdx-201ENSMUST00000000590 4380 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Usp28Q5I043 Gm45293-201ENSMUST00000209754 1812 ntBASIC17.35■□□□□ 0.37
Usp28Q5I043 H2afy2-201ENSMUST00000020283 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Usp28Q5I043 Atp2b3-203ENSMUST00000114479 4637 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
Usp28Q5I043 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Usp28Q5I043 Hnrnpm-201ENSMUST00000087582 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Usp28Q5I043 Ankrd44-201ENSMUST00000044359 6192 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
Usp28Q5I043 Las1l-201ENSMUST00000079987 2530 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Usp28Q5I043 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
Usp28Q5I043 Wipi2-201ENSMUST00000036872 5171 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Usp28Q5I043 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Usp28Q5I043 AI849053-201ENSMUST00000181021 2658 ntTSL 3 BASIC17.35■□□□□ 0.37
Usp28Q5I043 Camk2d-204ENSMUST00000106400 2722 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Usp28Q5I043 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Usp28Q5I043 Zbtb20-202ENSMUST00000114690 2759 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Usp28Q5I043 Tcf3-208ENSMUST00000105344 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Usp28Q5I043 Sgcd-201ENSMUST00000077221 1617 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Usp28Q5I043 Tcf19-202ENSMUST00000160885 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Usp28Q5I043 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
Usp28Q5I043 Dmkn-203ENSMUST00000085688 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Usp28Q5I043 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Usp28Q5I043 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Usp28Q5I043 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
Usp28Q5I043 Rad51-201ENSMUST00000028795 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Usp28Q5I043 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Usp28Q5I043 Llgl1-201ENSMUST00000052346 4303 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
Usp28Q5I043 Coil-202ENSMUST00000107898 3120 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
Usp28Q5I043 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Usp28Q5I043 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC17.34■□□□□ 0.37
Usp28Q5I043 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Usp28Q5I043 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
Usp28Q5I043 Dyrk3-201ENSMUST00000016670 3164 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Usp28Q5I043 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC17.34■□□□□ 0.37
Usp28Q5I043 Synrg-207ENSMUST00000183456 3990 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
Usp28Q5I043 Plin5-201ENSMUST00000019808 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Usp28Q5I043 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Usp28Q5I043 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Usp28Q5I043 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Usp28Q5I043 Zfand3-201ENSMUST00000057897 2617 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Usp28Q5I043 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
Usp28Q5I043 Vps37a-201ENSMUST00000098817 6379 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Usp28Q5I043 Tfap2c-201ENSMUST00000030391 2838 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Usp28Q5I043 Men1-206ENSMUST00000113502 2652 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Usp28Q5I043 Kcnn1-208ENSMUST00000212611 2528 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Usp28Q5I043 Kif1c-201ENSMUST00000072187 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Usp28Q5I043 Cd151-202ENSMUST00000106000 1865 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
Usp28Q5I043 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
Usp28Q5I043 Ptpn6-210ENSMUST00000174265 1743 ntTSL 5 BASIC17.33■□□□□ 0.37
Usp28Q5I043 Gm38318-201ENSMUST00000195769 1706 ntBASIC17.33■□□□□ 0.37
Usp28Q5I043 Celf4-206ENSMUST00000224553 1729 ntBASIC17.33■□□□□ 0.37
Usp28Q5I043 Dach1-201ENSMUST00000069334 5063 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Usp28Q5I043 Gm14859-201ENSMUST00000117752 357 ntBASIC17.33■□□□□ 0.36
Usp28Q5I043 Gm15510-201ENSMUST00000123644 1172 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Usp28Q5I043 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Usp28Q5I043 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Usp28Q5I043 Gm17807-201ENSMUST00000186869 298 ntBASIC17.33■□□□□ 0.36
Usp28Q5I043 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC17.33■□□□□ 0.36
Usp28Q5I043 CT009510.1-201ENSMUST00000227972 270 ntBASIC17.33■□□□□ 0.36
Usp28Q5I043 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Usp28Q5I043 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Usp28Q5I043 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Usp28Q5I043 Cbfa2t3-201ENSMUST00000006525 3161 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
Usp28Q5I043 Iqcm-201ENSMUST00000034033 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Usp28Q5I043 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Usp28Q5I043 Mapk9-205ENSMUST00000109179 4682 ntTSL 5 BASIC17.33■□□□□ 0.36
Usp28Q5I043 Mapk9-209ENSMUST00000164643 4682 ntTSL 5 BASIC17.33■□□□□ 0.36
Usp28Q5I043 Nab1-205ENSMUST00000186764 3640 ntAPPRIS ALT1 TSL 5 BASIC17.33■□□□□ 0.36
Usp28Q5I043 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Usp28Q5I043 Cdc42ep1-201ENSMUST00000059619 2542 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Usp28Q5I043 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Usp28Q5I043 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 59.2 ms