Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Ddi2-201ENSMUST00000102484 9553 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Col8a1Q00780 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.32
Col8a1Q00780 Gm13216-201ENSMUST00000117145 591 ntBASIC13.02□□□□□ -0.33
Col8a1Q00780 Gm26664-201ENSMUST00000181140 705 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Col8a1Q00780 Mir8102-201ENSMUST00000184148 139 ntBASIC13.02□□□□□ -0.33
Col8a1Q00780 Reep6-201ENSMUST00000040081 850 ntTSL 5 BASIC13.02□□□□□ -0.33
Col8a1Q00780 Hes5-201ENSMUST00000049621 1273 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col8a1Q00780 Eml2-201ENSMUST00000048502 2275 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col8a1Q00780 Gm13410-201ENSMUST00000117058 1415 ntBASIC13.02□□□□□ -0.33
Col8a1Q00780 Olfr533-202ENSMUST00000211093 2397 ntAPPRIS P1 TSL 3 BASIC13.02□□□□□ -0.33
Col8a1Q00780 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Col8a1Q00780 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col8a1Q00780 Olah-202ENSMUST00000115087 1479 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col8a1Q00780 Ctage5-213ENSMUST00000176464 4434 ntTSL 5 BASIC13.02□□□□□ -0.33
Col8a1Q00780 Chp2-201ENSMUST00000033152 1456 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col8a1Q00780 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col8a1Q00780 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col8a1Q00780 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col8a1Q00780 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col8a1Q00780 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col8a1Q00780 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Col8a1Q00780 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC13.02□□□□□ -0.33
Col8a1Q00780 Chst8-204ENSMUST00000205259 1980 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Col8a1Q00780 Fmnl2-202ENSMUST00000050719 3380 ntTSL 5 BASIC13.01□□□□□ -0.33
Col8a1Q00780 Adamts14-201ENSMUST00000092486 5188 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col8a1Q00780 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Col8a1Q00780 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col8a1Q00780 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col8a1Q00780 Zfp316-202ENSMUST00000161448 6891 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col8a1Q00780 Sphk1-201ENSMUST00000063396 2659 ntAPPRIS ALT2 TSL 2 BASIC13.01□□□□□ -0.33
Col8a1Q00780 B9d1-201ENSMUST00000102657 817 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col8a1Q00780 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC13.01□□□□□ -0.33
Col8a1Q00780 Mvk-206ENSMUST00000137167 1049 ntTSL 2 BASIC13.01□□□□□ -0.33
Col8a1Q00780 4930556N13Rik-201ENSMUST00000173677 1034 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Col8a1Q00780 Gm38293-201ENSMUST00000193209 600 ntTSL 2 BASIC13.01□□□□□ -0.33
Col8a1Q00780 Gm35549-203ENSMUST00000204619 644 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Col8a1Q00780 Cript-201ENSMUST00000024959 1184 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col8a1Q00780 Psmc5-201ENSMUST00000021049 1316 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col8a1Q00780 Kcnn1-201ENSMUST00000110078 4047 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col8a1Q00780 Kcnn1-202ENSMUST00000110081 4045 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Col8a1Q00780 Rnf25-202ENSMUST00000113721 1451 ntAPPRIS ALT1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col8a1Q00780 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col8a1Q00780 Slco3a1-201ENSMUST00000026897 4589 ntAPPRIS P4 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col8a1Q00780 Pdzd11-201ENSMUST00000015812 1626 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col8a1Q00780 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col8a1Q00780 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col8a1Q00780 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col8a1Q00780 Gm16976-201ENSMUST00000099718 1894 ntTSL 5 BASIC13.01□□□□□ -0.33
Col8a1Q00780 Dmkn-203ENSMUST00000085688 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col8a1Q00780 Fbxl12os-202ENSMUST00000136376 2349 ntTSL 2 BASIC13.01□□□□□ -0.33
Col8a1Q00780 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC13.01□□□□□ -0.33
Col8a1Q00780 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col8a1Q00780 A330074K22Rik-201ENSMUST00000183235 2489 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Col8a1Q00780 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
Col8a1Q00780 Cacna2d2-202ENSMUST00000085092 5183 ntAPPRIS P4 TSL 5 BASIC13.01□□□□□ -0.33
Col8a1Q00780 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col8a1Q00780 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col8a1Q00780 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC13□□□□□ -0.33
Col8a1Q00780 Wnt10b-206ENSMUST00000228546 2709 ntBASIC13□□□□□ -0.33
Col8a1Q00780 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col8a1Q00780 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col8a1Q00780 Phf1-201ENSMUST00000073724 2429 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col8a1Q00780 Mfge8-201ENSMUST00000032825 2125 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Col8a1Q00780 AC122301.2-201ENSMUST00000219020 1474 ntTSL 5 BASIC13□□□□□ -0.33
Col8a1Q00780 Gale-202ENSMUST00000102541 1430 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col8a1Q00780 Cpeb2-205ENSMUST00000169035 7050 ntAPPRIS P2 TSL 5 BASIC13□□□□□ -0.33
Col8a1Q00780 Ppdpf-202ENSMUST00000108841 689 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col8a1Q00780 Gm16198-201ENSMUST00000118766 670 ntBASIC13□□□□□ -0.33
Col8a1Q00780 Gm12017-201ENSMUST00000122453 1003 ntBASIC13□□□□□ -0.33
Col8a1Q00780 4930417O22Rik-201ENSMUST00000123249 1184 ntTSL 2 BASIC13□□□□□ -0.33
Col8a1Q00780 9130230N09Rik-201ENSMUST00000174568 663 ntTSL 3 BASIC13□□□□□ -0.33
Col8a1Q00780 Trp53tg5-201ENSMUST00000017864 934 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col8a1Q00780 Gm27306-201ENSMUST00000183970 107 ntBASIC13□□□□□ -0.33
Col8a1Q00780 Asb1-205ENSMUST00000188081 1272 ntTSL 1 (best) BASIC13□□□□□ -0.33
Col8a1Q00780 Asb1-206ENSMUST00000188879 1299 ntTSL 1 (best) BASIC13□□□□□ -0.33
Col8a1Q00780 0610005C13Rik-201ENSMUST00000209416 856 ntTSL 5 BASIC13□□□□□ -0.33
Col8a1Q00780 Zfp706-204ENSMUST00000226671 447 ntAPPRIS P1 BASIC13□□□□□ -0.33
Col8a1Q00780 Aip-201ENSMUST00000025767 1261 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col8a1Q00780 Cdh24-201ENSMUST00000067784 3489 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Col8a1Q00780 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Col8a1Q00780 Mfsd4b1-201ENSMUST00000163705 2677 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col8a1Q00780 Afg1l-201ENSMUST00000041024 2513 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col8a1Q00780 Dlg5-203ENSMUST00000090398 7851 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col8a1Q00780 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC13□□□□□ -0.33
Col8a1Q00780 Matk-203ENSMUST00000119547 1916 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Col8a1Q00780 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Col8a1Q00780 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Col8a1Q00780 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Col8a1Q00780 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col8a1Q00780 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col8a1Q00780 Cd82-202ENSMUST00000099696 1657 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col8a1Q00780 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Col8a1Q00780 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Col8a1Q00780 Trappc2-203ENSMUST00000116495 1613 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col8a1Q00780 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col8a1Q00780 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col8a1Q00780 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col8a1Q00780 Mepce-201ENSMUST00000031740 3128 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col8a1Q00780 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col8a1Q00780 A230087F16Rik-202ENSMUST00000181561 1303 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 47 ms