Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Phc2-201ENSMUST00000030588 3949 ntAPPRIS P3 TSL 5 BASIC16.65■□□□□ 0.26
Chmp6P0C0A3 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC16.65■□□□□ 0.26
Chmp6P0C0A3 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Chmp6P0C0A3 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Chmp6P0C0A3 Tmem33-204ENSMUST00000161369 6164 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Chmp6P0C0A3 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
Chmp6P0C0A3 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Chmp6P0C0A3 Mir5131-201ENSMUST00000175426 93 ntBASIC16.65■□□□□ 0.26
Chmp6P0C0A3 4930519L02Rik-201ENSMUST00000197683 619 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Chmp6P0C0A3 Gm19164-201ENSMUST00000210667 640 ntBASIC16.65■□□□□ 0.26
Chmp6P0C0A3 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC16.65■□□□□ 0.26
Chmp6P0C0A3 AC148328.1-201ENSMUST00000216448 920 ntTSL 5 BASIC16.65■□□□□ 0.26
Chmp6P0C0A3 Gm2270-201ENSMUST00000222858 797 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Chmp6P0C0A3 Zfp606-201ENSMUST00000098822 4748 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Chmp6P0C0A3 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Chmp6P0C0A3 Anks1b-202ENSMUST00000099366 2549 ntTSL 5 BASIC16.65■□□□□ 0.26
Chmp6P0C0A3 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Chmp6P0C0A3 Glb1-201ENSMUST00000063042 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Chmp6P0C0A3 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Chmp6P0C0A3 St6galnac2-201ENSMUST00000079545 3643 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Chmp6P0C0A3 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Chmp6P0C0A3 Rgl1-203ENSMUST00000111859 5092 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Chmp6P0C0A3 Adgrd2-ps-201ENSMUST00000118797 2662 ntBASIC16.64■□□□□ 0.26
Chmp6P0C0A3 Gstz1-205ENSMUST00000222885 1571 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Chmp6P0C0A3 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Chmp6P0C0A3 Eif4g1-206ENSMUST00000115463 5378 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Chmp6P0C0A3 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Chmp6P0C0A3 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Chmp6P0C0A3 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Chmp6P0C0A3 Rpn2-201ENSMUST00000029171 2621 ntTSL 5 BASIC16.64■□□□□ 0.25
Chmp6P0C0A3 Maged1-201ENSMUST00000026142 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Chmp6P0C0A3 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Chmp6P0C0A3 Tpt1-201ENSMUST00000110894 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Chmp6P0C0A3 4930570G19Rik-204ENSMUST00000149387 986 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Chmp6P0C0A3 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC16.64■□□□□ 0.25
Chmp6P0C0A3 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Chmp6P0C0A3 Gm27646-201ENSMUST00000183989 110 ntBASIC16.64■□□□□ 0.25
Chmp6P0C0A3 Lce3c-201ENSMUST00000055375 567 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Chmp6P0C0A3 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Chmp6P0C0A3 Mettl27-202ENSMUST00000068617 1685 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Chmp6P0C0A3 Dmtn-201ENSMUST00000022694 5418 ntAPPRIS ALT1 TSL 5 BASIC16.64■□□□□ 0.25
Chmp6P0C0A3 Rasgrp2-208ENSMUST00000113476 2296 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
Chmp6P0C0A3 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
Chmp6P0C0A3 Pbk-201ENSMUST00000022612 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Chmp6P0C0A3 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Chmp6P0C0A3 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Chmp6P0C0A3 Foxl2-201ENSMUST00000051312 3256 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
Chmp6P0C0A3 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Chmp6P0C0A3 Fbxo34-201ENSMUST00000043112 2937 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Chmp6P0C0A3 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Chmp6P0C0A3 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Chmp6P0C0A3 Gbe1-203ENSMUST00000163832 2984 ntAPPRIS P5 TSL 5 BASIC16.63■□□□□ 0.25
Chmp6P0C0A3 Cnbp-203ENSMUST00000113619 1661 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Chmp6P0C0A3 Fbxo30-202ENSMUST00000129456 5060 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Chmp6P0C0A3 Lrrc56-203ENSMUST00000084446 2390 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Chmp6P0C0A3 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Chmp6P0C0A3 Hps1-201ENSMUST00000026194 2647 ntAPPRIS P3 TSL 5 BASIC16.63■□□□□ 0.25
Chmp6P0C0A3 Arid4b-201ENSMUST00000039538 5844 ntTSL 5 BASIC16.63■□□□□ 0.25
Chmp6P0C0A3 Pspc1-202ENSMUST00000163924 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Chmp6P0C0A3 Mapk8ip3-207ENSMUST00000121723 5410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Chmp6P0C0A3 Gm7230-201ENSMUST00000173026 815 ntBASIC16.63■□□□□ 0.25
Chmp6P0C0A3 Gm18733-201ENSMUST00000173950 856 ntBASIC16.63■□□□□ 0.25
Chmp6P0C0A3 D530033B14Rik-201ENSMUST00000205412 546 ntTSL 5 BASIC16.63■□□□□ 0.25
Chmp6P0C0A3 AC127302.2-201ENSMUST00000215212 268 ntBASIC16.63■□□□□ 0.25
Chmp6P0C0A3 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Chmp6P0C0A3 Ndufb9-201ENSMUST00000022980 704 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Chmp6P0C0A3 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Chmp6P0C0A3 Mllt1-201ENSMUST00000025053 3608 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Chmp6P0C0A3 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Chmp6P0C0A3 Stat3-207ENSMUST00000138438 2506 ntTSL 5 BASIC16.63■□□□□ 0.25
Chmp6P0C0A3 Tox3-201ENSMUST00000109621 3356 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Chmp6P0C0A3 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Chmp6P0C0A3 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Chmp6P0C0A3 Rest-202ENSMUST00000113449 6924 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Chmp6P0C0A3 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Chmp6P0C0A3 Tle3-205ENSMUST00000159630 4065 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Chmp6P0C0A3 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Chmp6P0C0A3 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Chmp6P0C0A3 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Chmp6P0C0A3 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Chmp6P0C0A3 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC16.62■□□□□ 0.25
Chmp6P0C0A3 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC16.62■□□□□ 0.25
Chmp6P0C0A3 Gm2651-201ENSMUST00000203560 838 ntBASIC16.62■□□□□ 0.25
Chmp6P0C0A3 Zfp524-203ENSMUST00000209030 1128 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Chmp6P0C0A3 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC16.62■□□□□ 0.25
Chmp6P0C0A3 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC16.62■□□□□ 0.25
Chmp6P0C0A3 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Chmp6P0C0A3 Syt6-201ENSMUST00000090697 4416 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Chmp6P0C0A3 Zbed5-201ENSMUST00000041466 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Chmp6P0C0A3 Gm3928-201ENSMUST00000121141 1307 ntBASIC16.62■□□□□ 0.25
Chmp6P0C0A3 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Chmp6P0C0A3 Atp11b-201ENSMUST00000029257 4868 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Chmp6P0C0A3 A330040F15Rik-202ENSMUST00000224046 1918 ntBASIC16.62■□□□□ 0.25
Chmp6P0C0A3 Trmt1-201ENSMUST00000001974 2567 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Chmp6P0C0A3 Kif1c-203ENSMUST00000102554 6684 ntAPPRIS P2 TSL 5 BASIC16.62■□□□□ 0.25
Chmp6P0C0A3 Tdrd6-201ENSMUST00000045717 7055 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Chmp6P0C0A3 Adam23-204ENSMUST00000114103 2655 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
Chmp6P0C0A3 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Chmp6P0C0A3 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Chmp6P0C0A3 Slc39a11-201ENSMUST00000042657 2781 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 45 ms