Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Brwd3-202ENSMUST00000101283 1066 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Col3a1P08121 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC18.07■□□□□ 0.48
Col3a1P08121 Rab3a-204ENSMUST00000110093 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col3a1P08121 Cyb561a3-201ENSMUST00000168445 1474 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
Col3a1P08121 Ube2i-208ENSMUST00000173084 1286 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col3a1P08121 Gm26854-201ENSMUST00000180418 705 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Col3a1P08121 Gm16845-201ENSMUST00000180419 1415 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Col3a1P08121 Elf3-202ENSMUST00000185752 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col3a1P08121 Hoxd12-201ENSMUST00000001878 2534 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col3a1P08121 Panct2-202ENSMUST00000188631 625 ntTSL 3 BASIC18.07■□□□□ 0.48
Col3a1P08121 Gm35911-201ENSMUST00000198837 677 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
Col3a1P08121 Wdr1-205ENSMUST00000201260 2139 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Col3a1P08121 Trip10-202ENSMUST00000224152 1812 ntAPPRIS ALT2 BASIC18.07■□□□□ 0.48
Col3a1P08121 Chst10-201ENSMUST00000027249 2975 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col3a1P08121 Phospho2-201ENSMUST00000028494 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col3a1P08121 Gpbar1-201ENSMUST00000077985 1075 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
Col3a1P08121 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col3a1P08121 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col3a1P08121 Nf2-201ENSMUST00000053079 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col3a1P08121 Rasgef1c-202ENSMUST00000093141 2120 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Col3a1P08121 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col3a1P08121 Prkab1-202ENSMUST00000111999 2026 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
Col3a1P08121 Nrg3-201ENSMUST00000166968 4011 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col3a1P08121 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col3a1P08121 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
Col3a1P08121 Tmem65-201ENSMUST00000072113 3747 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col3a1P08121 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC18.07■□□□□ 0.48
Col3a1P08121 Abhd11-202ENSMUST00000111216 972 ntTSL 3 BASIC18.07■□□□□ 0.48
Col3a1P08121 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC18.07■□□□□ 0.48
Col3a1P08121 Vsig2-204ENSMUST00000215271 891 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Col3a1P08121 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col3a1P08121 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Col3a1P08121 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col3a1P08121 Fam160a2-203ENSMUST00000118726 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col3a1P08121 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
Col3a1P08121 Guca1b-201ENSMUST00000024774 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col3a1P08121 Taf5-201ENSMUST00000026027 3258 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col3a1P08121 Stra8-203ENSMUST00000114999 1455 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col3a1P08121 Mars-201ENSMUST00000037290 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col3a1P08121 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC18.06■□□□□ 0.48
Col3a1P08121 Wdr91-201ENSMUST00000081214 2682 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col3a1P08121 Rpn2-201ENSMUST00000029171 2621 ntTSL 5 BASIC18.06■□□□□ 0.48
Col3a1P08121 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
Col3a1P08121 Gm38294-201ENSMUST00000192831 381 ntBASIC18.06■□□□□ 0.48
Col3a1P08121 Rpl32-202ENSMUST00000203816 906 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
Col3a1P08121 Gm18049-201ENSMUST00000208909 581 ntBASIC18.06■□□□□ 0.48
Col3a1P08121 Syce1l-201ENSMUST00000034219 896 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col3a1P08121 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col3a1P08121 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC18.06■□□□□ 0.48
Col3a1P08121 Ecm1-201ENSMUST00000029753 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col3a1P08121 Pola2-201ENSMUST00000025752 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col3a1P08121 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col3a1P08121 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col3a1P08121 Lamp2-203ENSMUST00000074913 2184 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col3a1P08121 Tatdn2-205ENSMUST00000204753 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col3a1P08121 Nfic-207ENSMUST00000221817 1531 ntTSL 5 BASIC18.05■□□□□ 0.48
Col3a1P08121 Dmkn-202ENSMUST00000054427 2034 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
Col3a1P08121 Chchd4-201ENSMUST00000040835 3472 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col3a1P08121 Crhr2-209ENSMUST00000213026 1443 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col3a1P08121 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col3a1P08121 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
Col3a1P08121 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
Col3a1P08121 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
Col3a1P08121 Sesn3-201ENSMUST00000034507 1827 ntTSL 5 BASIC18.05■□□□□ 0.48
Col3a1P08121 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Col3a1P08121 Gm42466-201ENSMUST00000202099 1301 ntBASIC18.05■□□□□ 0.48
Col3a1P08121 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col3a1P08121 Zfp707-202ENSMUST00000109967 1703 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col3a1P08121 Eef1akmt4-201ENSMUST00000115522 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col3a1P08121 Gm12264-201ENSMUST00000123949 500 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Col3a1P08121 Gm8239-201ENSMUST00000204094 444 ntTSL 2 BASIC18.05■□□□□ 0.48
Col3a1P08121 Gm11937-201ENSMUST00000076478 396 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
Col3a1P08121 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Col3a1P08121 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col3a1P08121 Aph1a-202ENSMUST00000056710 1601 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col3a1P08121 Traf5-201ENSMUST00000085573 1964 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
Col3a1P08121 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col3a1P08121 Kcnj14-201ENSMUST00000071937 2681 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col3a1P08121 Ppef2-201ENSMUST00000031359 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col3a1P08121 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col3a1P08121 Fam185a-201ENSMUST00000056045 3027 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col3a1P08121 Srpr-201ENSMUST00000034541 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col3a1P08121 Camk2d-221ENSMUST00000171289 2217 ntTSL 5 BASIC18.05■□□□□ 0.48
Col3a1P08121 Gm11738-201ENSMUST00000134069 2158 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Col3a1P08121 E230016M11Rik-201ENSMUST00000130657 1764 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Col3a1P08121 Smoc2-201ENSMUST00000024660 2832 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col3a1P08121 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col3a1P08121 Crem-239ENSMUST00000165086 2778 ntTSL 5 BASIC18.04■□□□□ 0.48
Col3a1P08121 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col3a1P08121 Pi4k2b-202ENSMUST00000031082 3034 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
Col3a1P08121 Fam178b-201ENSMUST00000114981 1659 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col3a1P08121 Hras-203ENSMUST00000124314 1073 ntTSL 5 BASIC18.04■□□□□ 0.48
Col3a1P08121 2410080I02Rik-201ENSMUST00000142712 414 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Col3a1P08121 Gm23547-201ENSMUST00000158210 271 ntBASIC18.04■□□□□ 0.48
Col3a1P08121 Gm25144-201ENSMUST00000179561 110 ntBASIC18.04■□□□□ 0.48
Col3a1P08121 Gm25352-201ENSMUST00000179815 110 ntBASIC18.04■□□□□ 0.48
Col3a1P08121 Gm27306-201ENSMUST00000183970 107 ntBASIC18.04■□□□□ 0.48
Col3a1P08121 B9d2-203ENSMUST00000205658 995 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col3a1P08121 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col3a1P08121 Gtf2e2-201ENSMUST00000167264 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 31.8 ms