Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Gse1-201ENSMUST00000034279 7127 ntAPPRIS P4 TSL 1 (best) BASIC12.69□□□□□ -0.38
Hmgb3O54879 Zfp668-204ENSMUST00000106263 3132 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Hmgb3O54879 Gpsm1-203ENSMUST00000078616 3127 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Hmgb3O54879 Hacd4-201ENSMUST00000030221 2089 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Hmgb3O54879 Tmem110-201ENSMUST00000006701 3742 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Hmgb3O54879 Smyd5-201ENSMUST00000045693 2486 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Hmgb3O54879 Etl4-201ENSMUST00000045555 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Hmgb3O54879 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Hmgb3O54879 Eif2b1-201ENSMUST00000031334 2013 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Hmgb3O54879 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Hmgb3O54879 Mdfic-201ENSMUST00000101663 3431 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Hmgb3O54879 Mdfic-206ENSMUST00000189359 3435 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Hmgb3O54879 Mdfic-207ENSMUST00000190255 3431 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Hmgb3O54879 Rtn4-205ENSMUST00000102843 4618 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Hmgb3O54879 Dusp15-203ENSMUST00000123121 2993 ntAPPRIS P1 TSL 3 BASIC12.69□□□□□ -0.38
Hmgb3O54879 Sh2b3-204ENSMUST00000122426 2777 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
Hmgb3O54879 Tor1aip1-201ENSMUST00000027738 1952 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
Hmgb3O54879 Tbx3os1-206ENSMUST00000202307 1787 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Hmgb3O54879 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
Hmgb3O54879 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Hmgb3O54879 Atp2a3-202ENSMUST00000108484 4467 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Hmgb3O54879 Zfp503-201ENSMUST00000043409 4216 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Hmgb3O54879 Map3k12-201ENSMUST00000023812 5182 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Hmgb3O54879 Acot3-201ENSMUST00000021653 3431 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
Hmgb3O54879 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Hmgb3O54879 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Hmgb3O54879 Mospd2-201ENSMUST00000004715 2015 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Hmgb3O54879 Arhgap28-201ENSMUST00000024840 5322 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Hmgb3O54879 Rasa4-201ENSMUST00000042135 2914 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Hmgb3O54879 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Hmgb3O54879 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Hmgb3O54879 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Hmgb3O54879 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Hmgb3O54879 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Hmgb3O54879 Bbs10-201ENSMUST00000040454 2744 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
Hmgb3O54879 Usp33-201ENSMUST00000026507 4153 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Hmgb3O54879 Fgf5-201ENSMUST00000031280 2501 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Hmgb3O54879 Zbtb7b-204ENSMUST00000107435 4333 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Hmgb3O54879 Dstyk-204ENSMUST00000188389 3232 ntTSL 5 BASIC12.68□□□□□ -0.38
Hmgb3O54879 Rad51-201ENSMUST00000028795 3368 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Hmgb3O54879 Pdlim7-206ENSMUST00000131306 1915 ntTSL 2 BASIC12.68□□□□□ -0.38
Hmgb3O54879 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Hmgb3O54879 Gnpat-201ENSMUST00000034466 2984 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Hmgb3O54879 Cacna1c-227ENSMUST00000220022 7765 ntTSL 5 BASIC12.68□□□□□ -0.38
Hmgb3O54879 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC12.68□□□□□ -0.38
Hmgb3O54879 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Hmgb3O54879 Plekhm1-201ENSMUST00000041272 5968 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Hmgb3O54879 Olfr718-ps1-202ENSMUST00000213631 4737 ntAPPRIS P5 TSL 5 BASIC12.67□□□□□ -0.38
Hmgb3O54879 Slc39a11-203ENSMUST00000106633 2688 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Hmgb3O54879 Gng2-204ENSMUST00000160013 3826 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Hmgb3O54879 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Hmgb3O54879 Nf2-201ENSMUST00000053079 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Hmgb3O54879 Neurod2-201ENSMUST00000041685 3142 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Hmgb3O54879 Dcc-202ENSMUST00000114943 5219 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Hmgb3O54879 Gm28043-201ENSMUST00000130871 6521 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
Hmgb3O54879 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC12.67□□□□□ -0.38
Hmgb3O54879 AL691505.1-201ENSMUST00000219965 1618 ntTSL 5 BASIC12.67□□□□□ -0.38
Hmgb3O54879 Speg-201ENSMUST00000087122 10801 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Hmgb3O54879 Daxx-201ENSMUST00000079421 2580 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Hmgb3O54879 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Hmgb3O54879 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Hmgb3O54879 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC12.67□□□□□ -0.38
Hmgb3O54879 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Hmgb3O54879 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Hmgb3O54879 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC12.67□□□□□ -0.38
Hmgb3O54879 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC12.67□□□□□ -0.38
Hmgb3O54879 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
Hmgb3O54879 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Hmgb3O54879 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Hmgb3O54879 Pard3-222ENSMUST00000162536 5175 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Hmgb3O54879 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Hmgb3O54879 Klhdc8b-207ENSMUST00000193286 2956 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Hmgb3O54879 Plcb3-201ENSMUST00000025912 4201 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Hmgb3O54879 Gpr146-201ENSMUST00000051293 4157 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Hmgb3O54879 Myo10-201ENSMUST00000022882 5880 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Hmgb3O54879 Evc-201ENSMUST00000031005 4325 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Hmgb3O54879 Ppfia3-201ENSMUST00000003961 4647 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Hmgb3O54879 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Hmgb3O54879 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Hmgb3O54879 Pogk-204ENSMUST00000135673 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Hmgb3O54879 Wnt11-201ENSMUST00000067495 3451 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Hmgb3O54879 Bmper-201ENSMUST00000071982 3791 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Hmgb3O54879 Lrp10-201ENSMUST00000022782 4228 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Hmgb3O54879 Zfpm2-201ENSMUST00000053467 4974 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Hmgb3O54879 Prrt2-201ENSMUST00000159916 2501 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Hmgb3O54879 Mcidas-201ENSMUST00000092089 2377 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Hmgb3O54879 Wtap-201ENSMUST00000007007 2051 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Hmgb3O54879 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
Hmgb3O54879 Dnmt3a-218ENSMUST00000174817 8737 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Hmgb3O54879 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Hmgb3O54879 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Hmgb3O54879 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Hmgb3O54879 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Hmgb3O54879 Pik3cd-205ENSMUST00000118704 4894 ntAPPRIS ALT1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Hmgb3O54879 Rad18-201ENSMUST00000068487 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Hmgb3O54879 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC12.66□□□□□ -0.38
Hmgb3O54879 Efnb1-201ENSMUST00000052839 3258 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Hmgb3O54879 Gm11336-201ENSMUST00000118168 334 ntBASIC12.66□□□□□ -0.38
Hmgb3O54879 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC12.66□□□□□ -0.38
Hmgb3O54879 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC12.66□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 122.7 ms