Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC15.16■□□□□ 0.02
Lima1Q9ERG0 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC15.16■□□□□ 0.02
Lima1Q9ERG0 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
Lima1Q9ERG0 Ighv6-1-201ENSMUST00000193612 343 ntBASIC15.16■□□□□ 0.02
Lima1Q9ERG0 Cblb-201ENSMUST00000114471 6648 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Lima1Q9ERG0 Ttll11-201ENSMUST00000028248 3176 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Lima1Q9ERG0 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Lima1Q9ERG0 Golim4-201ENSMUST00000038563 5546 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Lima1Q9ERG0 Sidt2-201ENSMUST00000038488 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Lima1Q9ERG0 Camk2b-205ENSMUST00000093355 1973 ntTSL 5 BASIC15.16■□□□□ 0.02
Lima1Q9ERG0 St8sia6-201ENSMUST00000003509 7618 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Lima1Q9ERG0 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Lima1Q9ERG0 Nrip2-201ENSMUST00000001561 1893 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Lima1Q9ERG0 Nagk-201ENSMUST00000037376 1405 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Lima1Q9ERG0 Malt1-201ENSMUST00000049248 5073 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Lima1Q9ERG0 Diras2-201ENSMUST00000057442 4786 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Lima1Q9ERG0 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Lima1Q9ERG0 St6gal2-201ENSMUST00000025000 6066 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
Lima1Q9ERG0 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Lima1Q9ERG0 Tns1-222ENSMUST00000212888 5643 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Lima1Q9ERG0 Adamts14-201ENSMUST00000092486 5188 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Lima1Q9ERG0 0610005C13Rik-207ENSMUST00000210866 2434 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Lima1Q9ERG0 Pex3-202ENSMUST00000105539 1961 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Lima1Q9ERG0 Gm16796-201ENSMUST00000126086 3172 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Lima1Q9ERG0 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Lima1Q9ERG0 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Lima1Q9ERG0 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC15.15■□□□□ 0.02
Lima1Q9ERG0 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC15.15■□□□□ 0.02
Lima1Q9ERG0 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Lima1Q9ERG0 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC15.15■□□□□ 0.02
Lima1Q9ERG0 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Lima1Q9ERG0 Rnf38-202ENSMUST00000098098 5061 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Lima1Q9ERG0 Chd1-205ENSMUST00000173311 4211 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Lima1Q9ERG0 Irs2-201ENSMUST00000040514 6323 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Lima1Q9ERG0 Map2k7-202ENSMUST00000062686 3525 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Lima1Q9ERG0 Acvrl1-204ENSMUST00000120028 1932 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Lima1Q9ERG0 Camk2g-217ENSMUST00000226630 1937 ntBASIC15.15■□□□□ 0.02
Lima1Q9ERG0 Phf12-201ENSMUST00000049167 4410 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Lima1Q9ERG0 Dlg1-201ENSMUST00000023454 3725 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Lima1Q9ERG0 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
Lima1Q9ERG0 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Lima1Q9ERG0 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Lima1Q9ERG0 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Lima1Q9ERG0 Pqlc3-208ENSMUST00000222203 1706 ntTSL 5 BASIC15.14■□□□□ 0.01
Lima1Q9ERG0 Slc16a9-201ENSMUST00000046807 3756 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Lima1Q9ERG0 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Lima1Q9ERG0 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Lima1Q9ERG0 Sync-201ENSMUST00000102599 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Lima1Q9ERG0 Glg1-204ENSMUST00000169020 7021 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Lima1Q9ERG0 Wdfy3-206ENSMUST00000174698 3858 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Lima1Q9ERG0 Slc18b1-206ENSMUST00000179321 2843 ntTSL 5 BASIC15.14■□□□□ 0.01
Lima1Q9ERG0 Nfe2l1-201ENSMUST00000081775 4654 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Lima1Q9ERG0 Prnp-201ENSMUST00000091288 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Lima1Q9ERG0 Gfod1-201ENSMUST00000055341 6928 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Lima1Q9ERG0 Cchcr1-201ENSMUST00000045956 2748 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Lima1Q9ERG0 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Lima1Q9ERG0 AC114585.2-202ENSMUST00000228094 426 ntBASIC15.14■□□□□ 0.01
Lima1Q9ERG0 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Lima1Q9ERG0 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
Lima1Q9ERG0 Ankrd24-201ENSMUST00000119336 3561 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Lima1Q9ERG0 Camk1g-204ENSMUST00000169907 1968 ntTSL 5 BASIC15.14■□□□□ 0.01
Lima1Q9ERG0 Eif3f-201ENSMUST00000033342 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Lima1Q9ERG0 Spag16-201ENSMUST00000065425 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Lima1Q9ERG0 Notch3-201ENSMUST00000087723 8044 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Lima1Q9ERG0 Dnajc6-205ENSMUST00000106933 5191 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Lima1Q9ERG0 Ldb3-208ENSMUST00000228044 1883 ntAPPRIS ALT2 BASIC15.14■□□□□ 0.01
Lima1Q9ERG0 Sirpa-203ENSMUST00000103202 3982 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Lima1Q9ERG0 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Lima1Q9ERG0 Slc30a2-201ENSMUST00000081094 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Lima1Q9ERG0 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Lima1Q9ERG0 Acot4-201ENSMUST00000021652 6203 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Lima1Q9ERG0 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Lima1Q9ERG0 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Lima1Q9ERG0 Hnf1a-201ENSMUST00000031535 3191 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Lima1Q9ERG0 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Lima1Q9ERG0 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC15.13■□□□□ 0.01
Lima1Q9ERG0 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC15.13■□□□□ 0.01
Lima1Q9ERG0 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Lima1Q9ERG0 Rassf5-203ENSMUST00000112442 3388 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Lima1Q9ERG0 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Lima1Q9ERG0 Otud6b-201ENSMUST00000117268 3266 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Lima1Q9ERG0 Plin5-201ENSMUST00000019808 1986 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Lima1Q9ERG0 Grip2-205ENSMUST00000162300 5206 ntAPPRIS P2 TSL 5 BASIC15.13■□□□□ 0.01
Lima1Q9ERG0 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC15.13■□□□□ 0.01
Lima1Q9ERG0 A330074K22Rik-201ENSMUST00000183235 2489 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Lima1Q9ERG0 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC15.13■□□□□ 0.01
Lima1Q9ERG0 Josd1-201ENSMUST00000023061 3394 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Lima1Q9ERG0 Tctex1d4-201ENSMUST00000062206 990 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Lima1Q9ERG0 Cebpzos-201ENSMUST00000063817 753 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
Lima1Q9ERG0 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Lima1Q9ERG0 Prrg4-201ENSMUST00000028593 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Lima1Q9ERG0 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Lima1Q9ERG0 Sox1ot-202ENSMUST00000186174 7420 ntTSL 5 BASIC15.13■□□□□ 0.01
Lima1Q9ERG0 Tsc22d2-201ENSMUST00000099090 9799 ntAPPRIS P3 TSL 3 BASIC15.13■□□□□ 0.01
Lima1Q9ERG0 Luc7l3-201ENSMUST00000021226 3373 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Lima1Q9ERG0 Slc35a2-202ENSMUST00000115660 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Lima1Q9ERG0 Psmd13-201ENSMUST00000026560 1989 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Lima1Q9ERG0 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Lima1Q9ERG0 Serpinf1-201ENSMUST00000000769 1832 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Lima1Q9ERG0 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 33.1 ms