Protein–RNA interactions for Protein: Q9EPU0

Upf1, Regulator of nonsense transcripts 1, mousemouse

Known RBP Predictions only

Length 1,124 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf1Q9EPU0 Gm18054-201ENSMUST00000207539 555 ntBASIC17.21■□□□□ 0.35
Upf1Q9EPU0 AC126253.1-201ENSMUST00000227974 824 ntBASIC17.21■□□□□ 0.35
Upf1Q9EPU0 Rpl10-202ENSMUST00000074085 855 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Upf1Q9EPU0 Gm12166-201ENSMUST00000093169 958 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Upf1Q9EPU0 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Upf1Q9EPU0 Ggn-205ENSMUST00000209019 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Upf1Q9EPU0 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Upf1Q9EPU0 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
Upf1Q9EPU0 H2-K1-201ENSMUST00000025181 1605 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Upf1Q9EPU0 Kcnq1-202ENSMUST00000185383 1535 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
Upf1Q9EPU0 2600006K01Rik-201ENSMUST00000047607 1406 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
Upf1Q9EPU0 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Upf1Q9EPU0 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
Upf1Q9EPU0 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC17.2■□□□□ 0.34
Upf1Q9EPU0 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Upf1Q9EPU0 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Upf1Q9EPU0 Slc25a19-201ENSMUST00000021089 2307 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Upf1Q9EPU0 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Upf1Q9EPU0 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Upf1Q9EPU0 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Upf1Q9EPU0 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Upf1Q9EPU0 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Upf1Q9EPU0 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Upf1Q9EPU0 Cryba4-203ENSMUST00000112385 808 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Upf1Q9EPU0 Gm11814-201ENSMUST00000119515 929 ntBASIC17.2■□□□□ 0.34
Upf1Q9EPU0 Gm6222-201ENSMUST00000120787 396 ntBASIC17.2■□□□□ 0.34
Upf1Q9EPU0 Gm9299-201ENSMUST00000206392 1140 ntBASIC17.2■□□□□ 0.34
Upf1Q9EPU0 AC156016.3-201ENSMUST00000228623 344 ntBASIC17.2■□□□□ 0.34
Upf1Q9EPU0 Rpl24-201ENSMUST00000023269 677 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Upf1Q9EPU0 Olfr686-201ENSMUST00000050157 1018 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
Upf1Q9EPU0 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Upf1Q9EPU0 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Upf1Q9EPU0 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC17.2■□□□□ 0.34
Upf1Q9EPU0 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Upf1Q9EPU0 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC17.2■□□□□ 0.34
Upf1Q9EPU0 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
Upf1Q9EPU0 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Upf1Q9EPU0 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC17.2■□□□□ 0.34
Upf1Q9EPU0 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Upf1Q9EPU0 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC17.2■□□□□ 0.34
Upf1Q9EPU0 Gm5912-201ENSMUST00000122282 1438 ntBASIC17.2■□□□□ 0.34
Upf1Q9EPU0 Mrpl44-201ENSMUST00000027464 1424 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Upf1Q9EPU0 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Upf1Q9EPU0 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Upf1Q9EPU0 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Upf1Q9EPU0 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Upf1Q9EPU0 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Upf1Q9EPU0 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Upf1Q9EPU0 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Upf1Q9EPU0 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Upf1Q9EPU0 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC17.19■□□□□ 0.34
Upf1Q9EPU0 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Upf1Q9EPU0 Gm15808-201ENSMUST00000119046 604 ntBASIC17.19■□□□□ 0.34
Upf1Q9EPU0 Ssty1-201ENSMUST00000180056 699 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
Upf1Q9EPU0 Gm29310-201ENSMUST00000185468 696 ntBASIC17.19■□□□□ 0.34
Upf1Q9EPU0 Gm21825-201ENSMUST00000185728 696 ntBASIC17.19■□□□□ 0.34
Upf1Q9EPU0 Gm29109-201ENSMUST00000185895 696 ntBASIC17.19■□□□□ 0.34
Upf1Q9EPU0 Gm21896-201ENSMUST00000186520 696 ntBASIC17.19■□□□□ 0.34
Upf1Q9EPU0 Gm21873-201ENSMUST00000186728 696 ntBASIC17.19■□□□□ 0.34
Upf1Q9EPU0 Gm21794-201ENSMUST00000187056 696 ntBASIC17.19■□□□□ 0.34
Upf1Q9EPU0 Gm21880-201ENSMUST00000187275 696 ntBASIC17.19■□□□□ 0.34
Upf1Q9EPU0 Gm21826-201ENSMUST00000187451 696 ntBASIC17.19■□□□□ 0.34
Upf1Q9EPU0 Gm21198-201ENSMUST00000188393 696 ntBASIC17.19■□□□□ 0.34
Upf1Q9EPU0 Gm21749-201ENSMUST00000189343 696 ntBASIC17.19■□□□□ 0.34
Upf1Q9EPU0 Gm21901-201ENSMUST00000189568 696 ntBASIC17.19■□□□□ 0.34
Upf1Q9EPU0 Gm29424-201ENSMUST00000189716 696 ntBASIC17.19■□□□□ 0.34
Upf1Q9EPU0 Gm28599-201ENSMUST00000189838 694 ntBASIC17.19■□□□□ 0.34
Upf1Q9EPU0 Gm21867-201ENSMUST00000189917 696 ntBASIC17.19■□□□□ 0.34
Upf1Q9EPU0 Gm29269-201ENSMUST00000190087 696 ntBASIC17.19■□□□□ 0.34
Upf1Q9EPU0 Gm21722-201ENSMUST00000190153 696 ntBASIC17.19■□□□□ 0.34
Upf1Q9EPU0 Gm28423-201ENSMUST00000190701 696 ntBASIC17.19■□□□□ 0.34
Upf1Q9EPU0 Gm21899-201ENSMUST00000190745 696 ntBASIC17.19■□□□□ 0.34
Upf1Q9EPU0 Gm21910-201ENSMUST00000191163 696 ntBASIC17.19■□□□□ 0.34
Upf1Q9EPU0 Gm21849-201ENSMUST00000191571 696 ntBASIC17.19■□□□□ 0.34
Upf1Q9EPU0 Gm28678-201ENSMUST00000191593 696 ntBASIC17.19■□□□□ 0.34
Upf1Q9EPU0 Gm20910-201ENSMUST00000193268 696 ntBASIC17.19■□□□□ 0.34
Upf1Q9EPU0 Gm21871-201ENSMUST00000194621 696 ntBASIC17.19■□□□□ 0.34
Upf1Q9EPU0 Srgn-201ENSMUST00000020271 938 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Upf1Q9EPU0 Gm44780-201ENSMUST00000205409 581 ntTSL 3 BASIC17.19■□□□□ 0.34
Upf1Q9EPU0 Gm33045-202ENSMUST00000210049 975 ntTSL 5 BASIC17.19■□□□□ 0.34
Upf1Q9EPU0 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Upf1Q9EPU0 AC139580.1-202ENSMUST00000223574 928 ntBASIC17.19■□□□□ 0.34
Upf1Q9EPU0 AC154846.1-201ENSMUST00000226278 862 ntBASIC17.19■□□□□ 0.34
Upf1Q9EPU0 Bccip-201ENSMUST00000033282 1244 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Upf1Q9EPU0 Ggn-201ENSMUST00000033886 588 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Upf1Q9EPU0 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Upf1Q9EPU0 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Upf1Q9EPU0 Pla2g16-203ENSMUST00000136756 1901 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Upf1Q9EPU0 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Upf1Q9EPU0 Erich1-201ENSMUST00000110813 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Upf1Q9EPU0 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC17.19■□□□□ 0.34
Upf1Q9EPU0 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Upf1Q9EPU0 Serpina11-202ENSMUST00000120251 1461 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Upf1Q9EPU0 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC17.18■□□□□ 0.34
Upf1Q9EPU0 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Upf1Q9EPU0 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Upf1Q9EPU0 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Upf1Q9EPU0 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
Upf1Q9EPU0 Aste1-202ENSMUST00000123807 2349 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
Upf1Q9EPU0 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 36.1 ms