Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Kmt5b-206ENSMUST00000113973 6130 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
Msh4Q99MT2 Kdm6b-201ENSMUST00000094077 6654 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
Msh4Q99MT2 Slc23a3-201ENSMUST00000027405 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Msh4Q99MT2 Klhl26-204ENSMUST00000209567 2615 ntTSL 3 BASIC14.93□□□□□ -0.02
Msh4Q99MT2 Pcdhgc4-203ENSMUST00000195239 2272 ntTSL 3 BASIC14.93□□□□□ -0.02
Msh4Q99MT2 Gm25990-201ENSMUST00000102440 86 ntBASIC14.93□□□□□ -0.02
Msh4Q99MT2 Gm11767-201ENSMUST00000129379 493 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Msh4Q99MT2 Gm15246-201ENSMUST00000149873 540 ntTSL 3 BASIC14.93□□□□□ -0.02
Msh4Q99MT2 Gm18733-201ENSMUST00000173950 856 ntBASIC14.93□□□□□ -0.02
Msh4Q99MT2 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC14.93□□□□□ -0.02
Msh4Q99MT2 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Msh4Q99MT2 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC14.93□□□□□ -0.02
Msh4Q99MT2 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC14.93□□□□□ -0.02
Msh4Q99MT2 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Msh4Q99MT2 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Msh4Q99MT2 Faf1-201ENSMUST00000102724 4468 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Msh4Q99MT2 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Msh4Q99MT2 March4-201ENSMUST00000047786 4553 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Msh4Q99MT2 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Msh4Q99MT2 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC14.93□□□□□ -0.02
Msh4Q99MT2 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
Msh4Q99MT2 Sike1-201ENSMUST00000029447 7375 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Msh4Q99MT2 Kif22-201ENSMUST00000032915 2115 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Msh4Q99MT2 Abraxas1-202ENSMUST00000055245 2139 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Msh4Q99MT2 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
Msh4Q99MT2 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Msh4Q99MT2 Pld4-201ENSMUST00000063888 1982 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Msh4Q99MT2 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Msh4Q99MT2 Gm10564-201ENSMUST00000097750 3113 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Msh4Q99MT2 Ppt1-201ENSMUST00000030412 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Msh4Q99MT2 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Msh4Q99MT2 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Msh4Q99MT2 Ggnbp2-213ENSMUST00000172405 2950 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Msh4Q99MT2 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Msh4Q99MT2 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Msh4Q99MT2 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Msh4Q99MT2 Mrc2-202ENSMUST00000100335 5795 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Msh4Q99MT2 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Msh4Q99MT2 Bclaf3-201ENSMUST00000057180 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Msh4Q99MT2 Susd6-201ENSMUST00000068519 4977 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Msh4Q99MT2 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Msh4Q99MT2 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC14.92□□□□□ -0.02
Msh4Q99MT2 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Msh4Q99MT2 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Msh4Q99MT2 4930519L02Rik-201ENSMUST00000197683 619 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Msh4Q99MT2 Gm9449-201ENSMUST00000207265 1011 ntBASIC14.92□□□□□ -0.02
Msh4Q99MT2 1700012D14Rik-201ENSMUST00000209597 605 ntTSL 3 BASIC14.92□□□□□ -0.02
Msh4Q99MT2 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC14.92□□□□□ -0.02
Msh4Q99MT2 Gm2270-201ENSMUST00000222858 797 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Msh4Q99MT2 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Msh4Q99MT2 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Msh4Q99MT2 Gm26666-201ENSMUST00000180763 2461 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Msh4Q99MT2 Pik3c2b-201ENSMUST00000077730 7928 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
Msh4Q99MT2 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
Msh4Q99MT2 Abl1-201ENSMUST00000028190 5794 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
Msh4Q99MT2 Rbm26-203ENSMUST00000163499 4212 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Msh4Q99MT2 Cnksr3-201ENSMUST00000015346 3447 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Msh4Q99MT2 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Msh4Q99MT2 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC14.92□□□□□ -0.02
Msh4Q99MT2 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Msh4Q99MT2 Sept8-202ENSMUST00000117061 4563 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
Msh4Q99MT2 Kirrel-202ENSMUST00000107618 7278 ntAPPRIS P2 TSL 5 BASIC14.91□□□□□ -0.02
Msh4Q99MT2 Ovca2-201ENSMUST00000071562 2670 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Msh4Q99MT2 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
Msh4Q99MT2 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Msh4Q99MT2 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Msh4Q99MT2 Gm31774-201ENSMUST00000212910 1366 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Msh4Q99MT2 BC037039-201ENSMUST00000192003 2205 ntBASIC14.91□□□□□ -0.02
Msh4Q99MT2 Gm4609-201ENSMUST00000106443 1002 ntBASIC14.91□□□□□ -0.02
Msh4Q99MT2 Tnnt1-203ENSMUST00000108587 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Msh4Q99MT2 Gm5138-201ENSMUST00000113842 1002 ntBASIC14.91□□□□□ -0.02
Msh4Q99MT2 Gm15191-201ENSMUST00000117933 1000 ntBASIC14.91□□□□□ -0.02
Msh4Q99MT2 Gm12182-201ENSMUST00000118655 1008 ntBASIC14.91□□□□□ -0.02
Msh4Q99MT2 Gm13882-201ENSMUST00000120886 1002 ntBASIC14.91□□□□□ -0.02
Msh4Q99MT2 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC14.91□□□□□ -0.02
Msh4Q99MT2 Gm10284-201ENSMUST00000145057 1005 ntBASIC14.91□□□□□ -0.02
Msh4Q99MT2 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Msh4Q99MT2 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Msh4Q99MT2 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC14.91□□□□□ -0.02
Msh4Q99MT2 Gm10481-201ENSMUST00000179228 1002 ntBASIC14.91□□□□□ -0.02
Msh4Q99MT2 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC14.91□□□□□ -0.02
Msh4Q99MT2 Gm2574-201ENSMUST00000181051 1002 ntBASIC14.91□□□□□ -0.02
Msh4Q99MT2 4930477E14Rik-201ENSMUST00000181412 621 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Msh4Q99MT2 Gm3200-201ENSMUST00000181493 1002 ntBASIC14.91□□□□□ -0.02
Msh4Q99MT2 Gm8825-201ENSMUST00000182565 998 ntBASIC14.91□□□□□ -0.02
Msh4Q99MT2 Gm4518-201ENSMUST00000182638 718 ntBASIC14.91□□□□□ -0.02
Msh4Q99MT2 Gm8330-201ENSMUST00000182754 1008 ntBASIC14.91□□□□□ -0.02
Msh4Q99MT2 Gm4575-201ENSMUST00000182991 1002 ntBASIC14.91□□□□□ -0.02
Msh4Q99MT2 Gm8709-201ENSMUST00000183230 1012 ntBASIC14.91□□□□□ -0.02
Msh4Q99MT2 Shisa5-218ENSMUST00000200515 1005 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Msh4Q99MT2 Gm20383-201ENSMUST00000203799 1227 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Msh4Q99MT2 Gm10060-201ENSMUST00000212002 111 ntBASIC14.91□□□□□ -0.02
Msh4Q99MT2 Bpifa3-201ENSMUST00000028984 1107 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
Msh4Q99MT2 Gm10293-201ENSMUST00000076317 1002 ntBASIC14.91□□□□□ -0.02
Msh4Q99MT2 Gm6316-201ENSMUST00000082064 1020 ntBASIC14.91□□□□□ -0.02
Msh4Q99MT2 Isg15-201ENSMUST00000085425 756 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Msh4Q99MT2 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
Msh4Q99MT2 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Msh4Q99MT2 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC14.91□□□□□ -0.02
Msh4Q99MT2 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Retrieved 100 of 76,532 protein–RNA pairs in 50.2 ms