Protein–RNA interactions for Protein: Q6IRU2

Tpm4, Tropomyosin alpha-4 chain, mousemouse

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tpm4Q6IRU2 Pcdhgc4-203ENSMUST00000195239 2272 ntTSL 3 BASIC17.16■□□□□ 0.34
Tpm4Q6IRU2 Ap1s1-201ENSMUST00000111080 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Tpm4Q6IRU2 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Tpm4Q6IRU2 Unc5d-203ENSMUST00000210298 3060 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Tpm4Q6IRU2 Unc5d-205ENSMUST00000211448 3087 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Tpm4Q6IRU2 Chd1-205ENSMUST00000173311 4211 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Tpm4Q6IRU2 Camk1g-204ENSMUST00000169907 1968 ntTSL 5 BASIC17.15■□□□□ 0.34
Tpm4Q6IRU2 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC17.15■□□□□ 0.34
Tpm4Q6IRU2 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC17.15■□□□□ 0.34
Tpm4Q6IRU2 Gm8258-201ENSMUST00000055593 1449 ntBASIC17.15■□□□□ 0.34
Tpm4Q6IRU2 Zhx3-203ENSMUST00000109460 4480 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Tpm4Q6IRU2 Brpf1-209ENSMUST00000204198 4307 ntTSL 5 BASIC17.15■□□□□ 0.34
Tpm4Q6IRU2 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Tpm4Q6IRU2 Gm12973-201ENSMUST00000143967 607 ntTSL 5 BASIC17.15■□□□□ 0.34
Tpm4Q6IRU2 Gm6345-202ENSMUST00000180900 204 ntBASIC17.15■□□□□ 0.34
Tpm4Q6IRU2 Gm17808-201ENSMUST00000200859 894 ntBASIC17.15■□□□□ 0.34
Tpm4Q6IRU2 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Tpm4Q6IRU2 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Tpm4Q6IRU2 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Tpm4Q6IRU2 Adck2-201ENSMUST00000051249 2287 ntTSL 5 BASIC17.15■□□□□ 0.34
Tpm4Q6IRU2 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Tpm4Q6IRU2 Ids-201ENSMUST00000101509 4972 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Tpm4Q6IRU2 Pdhb-201ENSMUST00000022268 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Tpm4Q6IRU2 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Tpm4Q6IRU2 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Tpm4Q6IRU2 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC17.15■□□□□ 0.34
Tpm4Q6IRU2 Gm45546-201ENSMUST00000211053 2394 ntBASIC17.15■□□□□ 0.34
Tpm4Q6IRU2 Arid3a-202ENSMUST00000105376 4892 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Tpm4Q6IRU2 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Tpm4Q6IRU2 Cpz-201ENSMUST00000038676 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Tpm4Q6IRU2 Gbp5-201ENSMUST00000090127 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Tpm4Q6IRU2 Tfap2a-203ENSMUST00000223869 2037 ntBASIC17.14■□□□□ 0.34
Tpm4Q6IRU2 Apoa4-201ENSMUST00000034585 1815 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
Tpm4Q6IRU2 Tomm70a-201ENSMUST00000166897 3778 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
Tpm4Q6IRU2 Mis12-206ENSMUST00000164220 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Tpm4Q6IRU2 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Tpm4Q6IRU2 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
Tpm4Q6IRU2 Cyp4f37-201ENSMUST00000077639 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Tpm4Q6IRU2 Dzip3-201ENSMUST00000114516 3331 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
Tpm4Q6IRU2 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Tpm4Q6IRU2 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Tpm4Q6IRU2 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC17.14■□□□□ 0.33
Tpm4Q6IRU2 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Tpm4Q6IRU2 Cebpzos-201ENSMUST00000063817 753 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
Tpm4Q6IRU2 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
Tpm4Q6IRU2 Zfp90-203ENSMUST00000212606 2685 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Tpm4Q6IRU2 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Tpm4Q6IRU2 Stard7-201ENSMUST00000110374 1530 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Tpm4Q6IRU2 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Tpm4Q6IRU2 Rgs20-201ENSMUST00000002533 1778 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
Tpm4Q6IRU2 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Tpm4Q6IRU2 Igfbp2-201ENSMUST00000047328 1307 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Tpm4Q6IRU2 Rspry1-202ENSMUST00000121101 3092 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Tpm4Q6IRU2 Erp29-203ENSMUST00000130451 5204 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Tpm4Q6IRU2 Samm50-201ENSMUST00000023071 1673 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Tpm4Q6IRU2 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Tpm4Q6IRU2 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Tpm4Q6IRU2 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Tpm4Q6IRU2 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Tpm4Q6IRU2 Rhot1-202ENSMUST00000055056 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Tpm4Q6IRU2 Tsc2-217ENSMUST00000227745 5598 ntAPPRIS ALT2 BASIC17.13■□□□□ 0.33
Tpm4Q6IRU2 Eif4g1-204ENSMUST00000115460 5638 ntAPPRIS P3 TSL 5 BASIC17.13■□□□□ 0.33
Tpm4Q6IRU2 BC037039-201ENSMUST00000192003 2205 ntBASIC17.13■□□□□ 0.33
Tpm4Q6IRU2 Fbxw7-204ENSMUST00000107679 4473 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Tpm4Q6IRU2 Edem3-202ENSMUST00000187951 3115 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Tpm4Q6IRU2 Elfn2-201ENSMUST00000088592 4846 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Tpm4Q6IRU2 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Tpm4Q6IRU2 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Tpm4Q6IRU2 Slc35e2-201ENSMUST00000043829 2910 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Tpm4Q6IRU2 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
Tpm4Q6IRU2 Taar2-201ENSMUST00000079134 1020 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Tpm4Q6IRU2 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC17.13■□□□□ 0.33
Tpm4Q6IRU2 Mcmbp-201ENSMUST00000057557 4237 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Tpm4Q6IRU2 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Tpm4Q6IRU2 AL691505.1-201ENSMUST00000219965 1618 ntTSL 5 BASIC17.13■□□□□ 0.33
Tpm4Q6IRU2 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Tpm4Q6IRU2 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Tpm4Q6IRU2 Fstl1-201ENSMUST00000114763 3789 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Tpm4Q6IRU2 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Tpm4Q6IRU2 Spag1-202ENSMUST00000171205 3219 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Tpm4Q6IRU2 Tmed8-201ENSMUST00000037418 7409 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Tpm4Q6IRU2 Ablim2-202ENSMUST00000101280 3042 ntTSL 5 BASIC17.13■□□□□ 0.33
Tpm4Q6IRU2 Hnf4a-201ENSMUST00000018094 4356 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Tpm4Q6IRU2 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Tpm4Q6IRU2 Gadd45gip1-201ENSMUST00000036734 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Tpm4Q6IRU2 Senp1-204ENSMUST00000180657 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Tpm4Q6IRU2 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Tpm4Q6IRU2 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Tpm4Q6IRU2 Csrnp1-203ENSMUST00000214058 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Tpm4Q6IRU2 Ncs1-201ENSMUST00000000199 4653 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Tpm4Q6IRU2 Miga1-204ENSMUST00000199334 4024 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Tpm4Q6IRU2 Cnksr3-201ENSMUST00000015346 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Tpm4Q6IRU2 Gm7669-201ENSMUST00000210184 1603 ntBASIC17.12■□□□□ 0.33
Tpm4Q6IRU2 Esr1-202ENSMUST00000105588 2733 ntTSL 5 BASIC17.12■□□□□ 0.33
Tpm4Q6IRU2 Gm13312-201ENSMUST00000119631 718 ntBASIC17.12■□□□□ 0.33
Tpm4Q6IRU2 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
Tpm4Q6IRU2 AC121577.1-201ENSMUST00000227302 707 ntBASIC17.12■□□□□ 0.33
Tpm4Q6IRU2 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Tpm4Q6IRU2 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Tpm4Q6IRU2 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 35.4 ms