Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 2010010A06Rik-203ENSMUST00000190465 650 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Shmt1P50431 Gm43575-201ENSMUST00000196420 516 ntBASIC16.17■□□□□ 0.18
Shmt1P50431 Vsig2-206ENSMUST00000215957 851 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Shmt1P50431 1700080E11Rik-201ENSMUST00000035180 883 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Shmt1P50431 Rpl28-202ENSMUST00000078432 772 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
Shmt1P50431 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Shmt1P50431 Gm10175-201ENSMUST00000086013 645 ntBASIC16.17■□□□□ 0.18
Shmt1P50431 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Shmt1P50431 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Shmt1P50431 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Shmt1P50431 Nap1l5-201ENSMUST00000059539 1844 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
Shmt1P50431 BC037032-201ENSMUST00000140003 3974 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Shmt1P50431 Phb2-201ENSMUST00000004375 1318 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
Shmt1P50431 1700029J07Rik-202ENSMUST00000098786 1340 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Shmt1P50431 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Shmt1P50431 Espnl-202ENSMUST00000176156 2886 ntTSL 5 BASIC16.16■□□□□ 0.18
Shmt1P50431 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC16.16■□□□□ 0.18
Shmt1P50431 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Shmt1P50431 Srrm1-208ENSMUST00000136342 3152 ntAPPRIS P3 TSL 5 BASIC16.16■□□□□ 0.18
Shmt1P50431 Endov-203ENSMUST00000106245 5126 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Shmt1P50431 Dsg2-202ENSMUST00000120102 3590 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Shmt1P50431 Slc5a5-201ENSMUST00000000809 2928 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Shmt1P50431 Gm29361-201ENSMUST00000183323 2000 ntBASIC16.16■□□□□ 0.18
Shmt1P50431 Card9-202ENSMUST00000100303 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Shmt1P50431 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Shmt1P50431 4930556N13Rik-201ENSMUST00000173677 1034 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Shmt1P50431 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
Shmt1P50431 9130024F11Rik-204ENSMUST00000187927 517 ntTSL 5 BASIC16.16■□□□□ 0.18
Shmt1P50431 AC159295.1-201ENSMUST00000225326 940 ntBASIC16.16■□□□□ 0.18
Shmt1P50431 Car10-205ENSMUST00000107861 2613 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Shmt1P50431 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Shmt1P50431 Mob4-202ENSMUST00000159311 1816 ntTSL 3 BASIC16.16■□□□□ 0.18
Shmt1P50431 C920006O11Rik-201ENSMUST00000180974 1444 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Shmt1P50431 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Shmt1P50431 Gm45351-201ENSMUST00000210683 2545 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Shmt1P50431 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Shmt1P50431 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC16.16■□□□□ 0.18
Shmt1P50431 Jph4-201ENSMUST00000022819 4489 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Shmt1P50431 Tmem229b-206ENSMUST00000174697 3697 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
Shmt1P50431 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC16.16■□□□□ 0.18
Shmt1P50431 Gm17018-201ENSMUST00000047057 1345 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Shmt1P50431 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Shmt1P50431 Foxo3-201ENSMUST00000056974 2889 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Shmt1P50431 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Shmt1P50431 Sh2b3-204ENSMUST00000122426 2777 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
Shmt1P50431 Slc29a4-201ENSMUST00000058418 2789 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Shmt1P50431 Cmtm1-202ENSMUST00000160596 1900 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Shmt1P50431 Rhbg-201ENSMUST00000171887 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Shmt1P50431 Tmem161a-214ENSMUST00000182980 2080 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Shmt1P50431 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Shmt1P50431 Klf15-204ENSMUST00000203607 2240 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Shmt1P50431 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Shmt1P50431 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
Shmt1P50431 Dlx4os-201ENSMUST00000156477 1664 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Shmt1P50431 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Shmt1P50431 Gm15939-201ENSMUST00000160756 2147 ntTSL 5 BASIC16.15■□□□□ 0.18
Shmt1P50431 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Shmt1P50431 Dusp3-205ENSMUST00000143177 391 ntTSL 3 BASIC16.15■□□□□ 0.18
Shmt1P50431 Gm5914-202ENSMUST00000182863 375 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Shmt1P50431 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC16.15■□□□□ 0.18
Shmt1P50431 AC174742.1-201ENSMUST00000218272 304 ntBASIC16.15■□□□□ 0.18
Shmt1P50431 Bloc1s5-203ENSMUST00000224902 612 ntBASIC16.15■□□□□ 0.18
Shmt1P50431 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Shmt1P50431 Lamtor4-201ENSMUST00000062067 877 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Shmt1P50431 Mrps36-202ENSMUST00000078573 571 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Shmt1P50431 Arhgef10l-201ENSMUST00000039204 4493 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
Shmt1P50431 Med20-201ENSMUST00000024778 2054 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Shmt1P50431 Ppfia3-207ENSMUST00000211067 4565 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
Shmt1P50431 Abat-202ENSMUST00000115838 1348 ntTSL 2 BASIC16.15■□□□□ 0.18
Shmt1P50431 Psmb10-201ENSMUST00000034369 1311 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Shmt1P50431 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Shmt1P50431 Cbx8-201ENSMUST00000026663 3580 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Shmt1P50431 Tmem183a-201ENSMUST00000049470 3149 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
Shmt1P50431 Dact1-201ENSMUST00000061273 3650 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Shmt1P50431 Sgpp1-202ENSMUST00000220285 3200 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Shmt1P50431 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Shmt1P50431 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Shmt1P50431 Gm13375-201ENSMUST00000126967 854 ntTSL 2 BASIC16.14■□□□□ 0.17
Shmt1P50431 Pcp2-204ENSMUST00000136105 504 ntAPPRIS P4 TSL 1 (best) BASIC16.14■□□□□ 0.17
Shmt1P50431 Gm25911-201ENSMUST00000157621 56 ntBASIC16.14■□□□□ 0.17
Shmt1P50431 Mir3113-201ENSMUST00000175478 76 ntBASIC16.14■□□□□ 0.17
Shmt1P50431 Gm7556-201ENSMUST00000201178 1084 ntBASIC16.14■□□□□ 0.17
Shmt1P50431 Gm31545-201ENSMUST00000209358 1219 ntTSL 5 BASIC16.14■□□□□ 0.17
Shmt1P50431 Gm45683-201ENSMUST00000210825 1247 ntBASIC16.14■□□□□ 0.17
Shmt1P50431 AC225888.1-201ENSMUST00000227184 728 ntBASIC16.14■□□□□ 0.17
Shmt1P50431 Mzb1-201ENSMUST00000025211 905 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Shmt1P50431 1110038F14Rik-201ENSMUST00000071792 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Shmt1P50431 Gm8281-202ENSMUST00000163719 1954 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
Shmt1P50431 Zkscan3-204ENSMUST00000117721 5788 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Shmt1P50431 Tnfsf13-202ENSMUST00000108648 1503 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
Shmt1P50431 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Shmt1P50431 Txnrd3-202ENSMUST00000101171 2494 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Shmt1P50431 Slc35c1-202ENSMUST00000125276 2668 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Shmt1P50431 Slc30a10-201ENSMUST00000061093 5836 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Shmt1P50431 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC16.13■□□□□ 0.17
Shmt1P50431 Anxa3-201ENSMUST00000031447 1595 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Shmt1P50431 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Shmt1P50431 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Shmt1P50431 Atf3-201ENSMUST00000027941 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Shmt1P50431 Vstm5-201ENSMUST00000034413 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 34.1 ms